RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 FAM199XQ6PEV8 388 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-206ENST00000531480 DTWD1Q8N5C7 304 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 AMER3Q8N944 861 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 OR4F6Q8NGB9 312 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 UTP15Q8TED0 518 aaKnown RBP13.74□□□□□ -0.21
CPSF1-206ENST00000531480 MS4A6EQ96DS6 147 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 RNF31Q96EP0 1072 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 SLC45A3Q96JT2 553 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 DCBLD2Q96PD2 775 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 EFHD1Q9BUP0 239 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 SLC7A5P2Q9GIP4 190 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 WDR54Q9H977 334 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 CLK4Q9HAZ1 481 aaKnown RBP13.74□□□□□ -0.21
CPSF1-206ENST00000531480 NKIRAS1Q9NYS0 192 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 TRPS1Q9UHF7 1281 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 KCND3Q9UK17 655 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 CROTQ9UKG9 612 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 CDC14AQ9UNH5 594 aa13.74□□□□□ -0.21
CPSF1-206ENST00000531480 CACNA1GO43497 2377 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 URADA6NGE7 173 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 ANKDD1BA6NHY2 528 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 VSTM2BA6NLU5 285 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 C4orf51C9J302 202 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 FOXE1O00358 373 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 UBFD1O14562 309 aaKnown RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 GALR3O60755 368 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 CNOT3O75175 753 aaKnown RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 KLF7O75840 302 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 ESRRBO95718 433 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 STATHP02808 62 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 BPGMP07738 259 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 CD63P08962 238 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 PIM1P11309 404 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 ALOX12P18054 663 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 WT1P19544 449 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 TCN2P20062 427 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 ALAS2P22557 587 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 HNRNPH1P31943 449 aaKnown RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 HPDP32754 393 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 ARFIP1P53367 373 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 UCNP55089 124 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 STXBP1P61764 594 aaKnown RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 GALNT1Q10472 559 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 SRSF6Q13247 344 aaKnown RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 DNASE1L3Q13609 305 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 NCF4Q15080 339 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 C1orf189Q5VU69 101 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 NIPAL1Q6NVV3 410 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 LRRC69Q6ZNQ3 347 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 MED25Q71SY5 747 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 OVCH1Q7RTY7 1134 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 PRSS41Q7RTY9 318 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 MILR1Q7Z6M3 343 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 PDSS2Q86YH6 399 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 CCDC63Q8NA47 563 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 TRPC4APQ8TEL6 797 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 AGAP11Q8TF27 550 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 MR1Q95460 341 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 GAL3ST3Q96A11 431 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 ARL8AQ96BM9 186 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 REPS1Q96D71 796 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 NAF1Q96HR8 494 aaKnown RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 CDK15Q96Q40 435 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 TRMOQ9BU70 441 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 GATA5Q9BWX5 397 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-206ENST00000531480 MS4A8Q9BY19 250 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 TGIF2Q9GZN2 237 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 KLHL31Q9H511 634 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 ZNF304Q9HCX3 659 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 FAM53CQ9NYF3 392 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 IL17BQ9UHF5 180 aa13.73□□□□□ -0.21
CPSF1-206ENST00000531480 MGAQ8IWI9 3026 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 NUP210LQ5VU65 1888 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 BIRC5O15392 142 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ENO1P06733 434 aaKnown RBP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 NR1D1P20393 614 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ITPKBP27987 946 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 PTPN4P29074 926 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 DLSTP36957 453 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 SERPINB4P48594 390 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 MAGOHP61326 146 aaKnown RBP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 PPP2R2AP63151 447 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 CYP4F2P78329 520 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ZNF33BQ06732 778 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ASPHQ12797 758 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ZRSR2Q15696 482 aaKnown RBP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 CPSF6Q16630 551 aaKnown RBP eCLIP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 FRG2Q64ET8 278 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ABHD13Q7L211 337 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 SYVN1Q86TM6 617 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 VASH2Q86V25 355 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 OR2L5Q8NG80 312 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 HUS1BQ8NHY5 278 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 PPP4R1Q8TF05 950 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 SREK1Q8WXA9 508 aaKnown RBP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ATP6V1E2Q96A05 226 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 KIAA1143Q96AT1 154 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 CRELD1Q96HD1 420 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 CNDP1Q96KN2 507 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms