RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ACTN3Q08043 901 aaPredicted RBP10.66□□□□□ -0.7
VPS28-214ENST00000531032 DEFB134Q4QY38 66 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 SPPL2CQ8IUH8 684 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 SIAH3Q8IW03 269 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 HORMAD2Q8N7B1 307 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 NT5CQ8TCD5 201 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 ACTRT1Q8TDG2 376 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 ELP5Q8TE02 316 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 FBXL8Q96CD0 374 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 MAGED4Q96JG8 741 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 OSBPL9Q96SU4 736 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 NAT9Q9BTE0 207 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 PLAC1Q9HBJ0 212 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 DCHS2Q6V1P9 2916 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 PKDREJQ9NTG1 2253 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 NPIPA5E9PKD4 350 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 FAM227AF5H4B4 570 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 DNALI1O14645 258 aaPredicted RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 CHST10O43529 356 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 DNAJB6O75190 326 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 BANF1O75531 89 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 SP1P08047 785 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 ENO2P09104 434 aaPredicted RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 AHRP35869 848 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 SCTRP47872 440 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 ST13P50502 369 aaKnown RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 OLR1P78380 273 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 OC90Q02509 493 aaPredicted RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 RGS1Q08116 209 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 PDAP1Q13442 181 aaKnown RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 PPP1R7Q15435 360 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 MSS51Q4VC12 460 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 CATSPEREQ5SY80 951 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 QSOX2Q6ZRP7 698 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 ABHD13Q7L211 337 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 GDF7Q7Z4P5 450 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 GALNTL5Q7Z4T8 443 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 KIF2BQ8N4N8 673 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 TBC1D19Q8N5T2 526 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 ADAMTS18Q8TE60 1221 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 UTP15Q8TED0 518 aaKnown RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 ATL1Q8WXF7 558 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 NEIL2Q969S2 332 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 CERS2Q96G23 380 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 TRIM51Q9BSJ1 452 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 TRIM54Q9BYV2 358 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 TRIM8Q9BZR9 551 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 TSPAN10Q9H1Z9 355 aaPredicted RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 SPNS1Q9H2V7 528 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 KCNF1Q9H3M0 494 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 TRIM45Q9H8W5 580 aaPredicted RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 CLK4Q9HAZ1 481 aaKnown RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 LRFN1Q9P244 771 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 SLC17A6Q9P2U8 582 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 ZFP69BQ9UJL9 534 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 CORO1CQ9ULV4 474 aaPredicted RBP10.65□□□□□ -0.7
VPS28-214ENST00000531032 SNX12Q9UMY4 172 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 NPIPA1Q9UND3 350 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 MEMO1Q9Y316 297 aa10.65□□□□□ -0.7
VPS28-214ENST00000531032 TEP1Q99973 2627 aaKnown RBP10.65□□□□□ -0.71
VPS28-214ENST00000531032 IGKV3D-11A0A0A0MRZ8 115 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 PABPN1LA6NDY0 278 aaKnown RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 SAGE2PA6NJ88 616 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 NDC80O14777 642 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 NME2P1O60361 137 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 SLC25A12O75746 678 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 B3GALT4O96024 378 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 ZNF888P0CJ79 500 aaPredicted RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 ESRRAP11474 423 aaPredicted RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 COX6B1P14854 86 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 TCP1P17987 556 aaKnown RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 NME2P22392 152 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 TPP2P29144 1249 aaPredicted RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 SMSP52788 366 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 PGGT1BP53609 377 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 REEP5Q00765 189 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 PPP1R3AQ16821 1122 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 TEDDM1Q5T9Z0 273 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 HECTD2Q5U5R9 776 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 ZNF468Q5VIY5 522 aaPredicted RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 SLC25A25Q6KCM7 469 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 SBSNQ6UWP8 590 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 RPS19BP1Q86WX3 136 aaKnown RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 ZNF227Q86WZ6 799 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 IGDCC3Q8IVU1 814 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 CHERPQ8IWX8 916 aaKnown RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 ARMC10Q8N2F6 343 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 GHDCQ8N2G8 530 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 GPATCH11Q8N954 259 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 ANKRD53Q8N9V6 530 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 FAM98AQ8NCA5 519 aaKnown RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 SLC5A11Q8WWX8 675 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 SLCO2A1Q92959 643 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 PDLIM5Q96HC4 596 aaKnown RBP10.64□□□□□ -0.71
VPS28-214ENST00000531032 OLFM1Q99784 485 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 SLC6A16Q9GZN6 736 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 CDCP1Q9H5V8 836 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 ASIC3Q9UHC3 531 aa10.64□□□□□ -0.71
VPS28-214ENST00000531032 IKZF3Q9UKT9 509 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms