RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 H0YIV9 168 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 H7BY64 318 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 AZIN1O14977 448 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 HDAC3O15379 428 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 CBFA2T3O75081 653 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ULK1O75385 1050 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 OR4F21O95013 312 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 KRT6AP02538 564 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 C9P02748 559 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 KRT6BP04259 564 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 CHRNGP07510 517 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 CDK4P11802 303 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 JUPP14923 745 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 TYRP1P17643 537 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ATF4P18848 351 aaPredicted RBP7.09□□□□□ -1.27
CD44-228ENST00000528455 TSPAN8P19075 237 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 GSTM2P28161 218 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ARRB2P32121 409 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 GRK3P35626 688 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 GRIA3P42263 894 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 KRT6CP48668 564 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 OR1D5P58170 312 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 GNGT1P63211 74 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 E2F1Q01094 437 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 TRAF3Q13114 568 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 CHIT1Q13231 466 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ILKQ13418 452 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 RBBP7Q16576 425 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ST3GAL2Q16842 350 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 XKR6Q5GH73 641 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 MANEAQ5SRI9 462 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 CATSPEREQ5SY80 951 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 KIAA1614Q5VZ46 1190 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 GRHL2Q6ISB3 625 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ZNF425Q6IV72 752 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 FBXO42Q6P3S6 717 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 TMEM71Q6P5X7 295 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 SPESP1Q6UW49 350 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 RPS27LQ71UM5 84 aaKnown RBP7.09□□□□□ -1.27
CD44-228ENST00000528455 FAM214BQ7L5A3 538 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 EFL1Q7Z2Z2 1120 aaKnown RBP7.09□□□□□ -1.27
CD44-228ENST00000528455 PIGWQ7Z7B1 504 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 GLRX5Q86SX6 157 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 SYVN1Q86TM6 617 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 CUZD1Q86UP6 607 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 LAS2Q8IYD9 372 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 LRRC34Q8IZ02 419 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 KRT78Q8N1N4 520 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 TBC1D19Q8N5T2 526 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ZNF781Q8N8C0 355 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 OR52B6Q8NGF0 335 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 WDR48Q8TAF3 677 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 STON2Q8WXE9 905 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 NCSTNQ92542 709 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 REPS1Q96D71 796 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 PRAP1Q96NZ9 151 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 NRTNQ99748 197 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 AIF1LQ9BQI0 150 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ACAT2Q9BWD1 397 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 SLC29A3Q9BZD2 475 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 RHBGQ9H310 441 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ACTR8Q9H981 624 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 MRPS30Q9NP92 439 aaKnown RBP7.09□□□□□ -1.27
CD44-228ENST00000528455 SLCO1B3Q9NPD5 702 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 PNPOQ9NVS9 261 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 KLHL3Q9UH77 587 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 TAC3Q9UHF0 121 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 POMT2Q9UKY4 750 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 ZNF490Q9ULM2 529 aaPredicted RBP7.09□□□□□ -1.27
CD44-228ENST00000528455 SNX6Q9UNH7 406 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 WASF3Q9UPY6 502 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 APOBEC2Q9Y235 224 aaKnown RBP7.09□□□□□ -1.27
CD44-228ENST00000528455 RNF11Q9Y3C5 154 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 NEUROG3Q9Y4Z2 214 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 MDC1Q14676 2089 aaKnown RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 MAP1BP46821 2468 aaKnown RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 AKAP13Q12802 2813 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 A0A0J9YY10 115 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 A0A1B0GTL3 188 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 TRBC2A0A5B9 178 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 TRPC5OSA6NMA1 111 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 FOXE1O00358 373 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 ZNF195O14628 629 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 DUX1O43812 170 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 HYAL3O43820 417 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 SRPX2O60687 465 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 PRAMEF4O60810 478 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 VPS4BO75351 444 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 LYPLA1O75608 230 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 SNRNP200O75643 2136 aaKnown RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 CPNE6O95741 557 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 FAM107AO95990 144 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 CHEK2O96017 543 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 CAPN1P07384 714 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 FTH1P19P0C7X4 201 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 TROVE2P10155 538 aaKnown RBP eCLIP7.08□□□□□ -1.28
CD44-228ENST00000528455 ALOX15P16050 662 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 UGT2B7P16662 529 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 SPINK2P20155 84 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 PTX3P26022 381 aaPredicted RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms