RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 C16orf78Q8WTQ4 265 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 MS4A6EQ96DS6 147 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 LOXL4Q96JB6 756 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 TRAPPC9Q96Q05 1148 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 OR52E6Q96RD3 313 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 MACROD1Q9BQ69 325 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 ZNF717Q9BY31 904 aaPredicted RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 RAB33BQ9H082 229 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 EPB41L1Q9H4G0 881 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 SYNPO2LQ9H987 977 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 MYNNQ9NPC7 610 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 C1GALT1Q9NS00 363 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 PCDHGA7Q9Y5G6 932 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 A0A088AWK7 358 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 GALR2O43603 387 aaPredicted RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 SLC35G6P0C7Q6 338 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 COX7A2P14406 83 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 HPCAL1P37235 193 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 PLA2G16P53816 162 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 TGM3Q08188 693 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 RNF44Q7L0R7 432 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 ULK2Q8IYT8 1036 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 TMEM132CQ8N3T6 1108 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 DPP10Q8N608 796 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 OR2L5Q8NG80 312 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.05■□□□□ 0.8
VPS28-208ENST00000527797 RERGQ96A58 199 aaPredicted RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 TM4SF19Q96DZ7 209 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 CLPTM1LQ96KA5 538 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 CDRT15Q96T59 188 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 PRPF18Q99633 342 aaKnown RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 HOPXQ9BPY8 73 aaPredicted RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 SLC6A16Q9GZN6 736 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 KLHL31Q9H511 634 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 DDX31Q9H8H2 851 aaKnown RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 IL1RL2Q9HB29 575 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 EPHA6Q9UF33 1036 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 WBP11Q9Y2W2 641 aaKnown RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 TRIM38O00635 465 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 SCAMP2O15127 329 aaKnown RBP20.04■□□□□ 0.8
VPS28-208ENST00000527797 ERI3O43414 337 aaKnown RBP20.04■□□□□ 0.8
VPS28-208ENST00000527797 PRAMEF10O60809 474 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 KLHL18O94889 574 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 NPPAP01160 153 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 ST6GAL1P15907 406 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 MAPK12P53778 367 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 OR1D5P58170 312 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 MAPKAPK3Q16644 382 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 UGT8Q16880 541 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 TRIM40Q6P9F5 258 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 IKBIPQ70UQ0 350 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 C19orf47Q8N9M1 422 aaKnown RBP20.04■□□□□ 0.8
VPS28-208ENST00000527797 CAMKVQ8NCB2 501 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 NCSTNQ92542 709 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 LRRC58Q96CX6 371 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 ZDHHC12Q96GR4 267 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 MAP3K3Q99759 626 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 C17orf62Q9BQA9 187 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 AICDAQ9GZX7 198 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 RMND5AQ9H871 391 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 LHX9Q9NQ69 397 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 GMEB2Q9UKD1 530 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 NCOR1O75376 2440 aa20.04■□□□□ 0.8
VPS28-208ENST00000527797 BDP1A6H8Y1 2624 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 TP53BP1Q12888 1972 aaPredicted RBP20.03■□□□□ 0.8
VPS28-208ENST00000527797 IGHV1OR21-1A0A087WYE8 117 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 EPN2O95208 641 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 MYF5P13349 255 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 RPL3P39023 403 aaKnown RBP20.03■□□□□ 0.8
VPS28-208ENST00000527797 MPLP40238 635 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 SSR2P43308 183 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 KIR3DL1P43629 444 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 NUBP1P53384 320 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 TAS2R50P59544 299 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 ELF3P78545 371 aaPredicted RBP20.03■□□□□ 0.8
VPS28-208ENST00000527797 FOXM1Q08050 763 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 NR1D2Q14995 579 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 NR0B2Q15466 257 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 TRMT5Q32P41 509 aaKnown RBP20.03■□□□□ 0.8
VPS28-208ENST00000527797 NKAIN2Q5VXU1 208 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 C8orf82Q6P1X6 216 aaPredicted RBP20.03■□□□□ 0.8
VPS28-208ENST00000527797 PRMT9Q6P2P2 845 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 ABHD17CQ6PCB6 329 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 FAM92BQ6ZTR7 304 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 GPR180Q86V85 440 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 MINDY1Q8N5J2 469 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 FAM13CQ8NE31 585 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 OR7A2PQ8NGA2 310 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 OR6C4Q8NGE1 309 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 TGM7Q96PF1 710 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 KCNC2Q96PR1 638 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 TBCDQ9BTW9 1192 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 REEP4Q9H6H4 257 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 SDK1Q7Z5N4 2213 aa20.03■□□□□ 0.8
VPS28-208ENST00000527797 LOC105369274A0A096LPK9 316 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 LOC102723532A0A0G2JNH3 316 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 URADA6NGE7 173 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 SLC9B1P1A6NJY1 282 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 GABRR3A8MPY1 467 aa20.02■□□□□ 0.8
VPS28-208ENST00000527797 H0YGG7 62 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms