RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 WDR83OSQ9Y284 106 aa3.34□□□□□ -1.87
CD44-217ENST00000525348 MRPL11Q9Y3B7 192 aaKnown RBP3.34□□□□□ -1.87
CD44-217ENST00000525348 EPRSP07814 1512 aaKnown RBP3.34□□□□□ -1.88
CD44-217ENST00000525348 CFAP43Q8NDM7 1665 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 ARPC4-TTLL3A0A0A6YYG9 625 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 A0A1W2PPK0 400 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 SYNDIG1LA6NDD5 238 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 MPTX1A8MV57 137 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 PTGESO14684 152 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TEX28O15482 410 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 ZW10O43264 779 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 SPRY1O43609 319 aaPredicted RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 ZBTB14O43829 449 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 ERAL1O75616 437 aaKnown RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 POP4O95707 220 aaKnown RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 VIMP08670 466 aaKnown RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 RAB40ALP0C0E4 278 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TRIM49P0CI25 452 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TRIM49CP0CI26 452 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TROVE2P10155 538 aaKnown RBP eCLIP3.33□□□□□ -1.88
CD44-217ENST00000525348 SLC2A2P11168 524 aaPredicted RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 ANXA13P27216 316 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TLX1P31314 330 aaPredicted RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 CCR10P46092 362 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 PSMD7P51665 324 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 DR1Q01658 176 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 AKAP17AQ02040 695 aaKnown RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 ACY1Q03154 408 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 ITGA7Q13683 1181 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 ZNF74Q16587 644 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TAF1BQ53T94 588 aaPredicted RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 WLSQ5T9L3 541 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 LCN1P1Q5VSP4 162 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 GARNL3Q5VVW2 1013 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TPGS2Q68CL5 300 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 KRTAP5-1Q6L8H4 278 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 GPRIN3Q6ZVF9 776 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 G2E3Q7L622 706 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TBC1D21Q8IYX1 336 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 OR6C4Q8NGE1 309 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 C11orf45Q8TAV5 145 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 GDAP1Q8TB36 358 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 MGARPQ8TDB4 240 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 CDKL2Q92772 493 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 PPP1R14BQ96C90 147 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 PRICKLE1Q96MT3 831 aaPredicted RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 RUFY1Q96T51 708 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 DESI2Q9BSY9 194 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TRIM4Q9C037 500 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 WWTR1Q9GZV5 400 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TRPV6Q9H1D0 765 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 RABEP2Q9H5N1 569 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 TRPV4Q9HBA0 871 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 PPANQ9NQ55 473 aaKnown RBP3.33□□□□□ -1.88
CD44-217ENST00000525348 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.33□□□□□ -1.88
CD44-217ENST00000525348 AATFQ9NY61 560 aaKnown RBP eCLIP3.33□□□□□ -1.88
CD44-217ENST00000525348 FHAD1B1AJZ9 1412 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 PLB1Q6P1J6 1458 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 ABCA10Q8WWZ4 1543 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 PREX1Q8TCU6 1659 aa3.33□□□□□ -1.88
CD44-217ENST00000525348 IGHV3OR16-10A0A075B7F0 116 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 GOLGA6L4A6NEF3 574 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 CCDC169A6NNP5 214 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 KPNA7A9QM74 516 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 SNURFLB1AK76 121 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 H0YC42 278 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 K7ENM7 598 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 ARPC2O15144 300 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 EPHB6O15197 1021 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 HDAC3O15379 428 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 NVLO15381 856 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 IDH3BO43837 385 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 PLOD3O60568 738 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 RPS6KA5O75582 802 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 SNX4O95219 450 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 PNMA6AP0CW24 399 aaPredicted RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 DESP17661 470 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 RBMS1P29558 406 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 EVI2BP34910 448 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 CTNNA1P35221 906 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 GCKP35557 465 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 ACADSBP45954 432 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 ASMTP46597 345 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 TUFMP49411 452 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 HUNKP57058 714 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 DSTNP60981 165 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 GUCY2DQ02846 1103 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 HSPA14Q0VDF9 509 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 LY6DQ14210 128 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 PPP1R7Q15435 360 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 BCL2A1Q16548 175 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 IMMTQ16891 758 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 VWC2Q2TAL6 325 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 MCMDC2Q4G0Z9 681 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 BMP2KLQ5H9B9 411 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 NEPROQ6NW34 567 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 KDELC1Q6UW63 502 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 GBP6Q6ZN66 633 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 IL17RELQ6ZVW7 336 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 CAMKMTQ7Z624 323 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms