RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 HCN1O60741 890 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 POMCP01189 267 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 ADRA2AP08913 450 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 SYN1P17600 705 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 CYP2B6P20813 491 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 PBX3P40426 434 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 DGKEP52429 567 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 TSPAN5P62079 268 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 CAMK2DQ13557 499 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 TSC22D1Q15714 1073 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 KYAT1Q16773 422 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 SWSAP1Q6NVH7 229 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC27A4Q6P1M0 643 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 VTCN1Q7Z7D3 282 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 OR2T11Q8NH01 316 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 RNF34Q969K3 372 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 MED18Q9BUE0 208 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 CINPQ9BW66 212 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 PAPOLGQ9BWT3 736 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 SIK2Q9H0K1 926 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 ABCG4Q9H172 646 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 REEP1Q9H902 201 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 EMC7Q9NPA0 242 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 NUP214P35658 2090 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 RBBP6Q7Z6E9 1792 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 GLYATL1P3A0A0U1RQE8 302 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 LY86O95711 162 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 FAM157BP0CG42 384 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 FPR1P21462 350 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 CLCN3P51790 818 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 C6orf136Q5SQH8 315 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 LIPKQ5VXJ0 399 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 FAM180BQ6P0A1 224 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 PDZD3Q86UT5 571 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 ZNF454Q8N9F8 522 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 BVESQ8NE79 360 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 WDR20Q8TBZ3 569 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 TRIM43Q96BQ3 446 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 XYLT2Q9H1B5 865 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 EVA1AQ9H8M9 152 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 HHATLQ9HCP6 504 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 THUMPD1Q9NXG2 353 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 CRYL1Q9Y2S2 319 aa11.62□□□□□ -0.55
LIMCH1-213ENST00000511496 IQCMA0A1B0GVH7 501 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 POM121BA6NF01 834 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SEC14L5O43304 696 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SSNA1O43805 119 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 OR56A5P0C7T3 313 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 NOS2P35228 1153 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 CTBP2P56545 445 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC6A3Q01959 620 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 MAPKAPK3Q16644 382 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 DGKKQ5KSL6 1271 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 DCAF8Q5TAQ9 597 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 TMEM207Q6UWW9 146 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 BEND4Q6ZU67 534 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 TRMT11Q7Z4G4 463 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 C12orf45Q8N5I9 185 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 GANCQ8TET4 914 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 L3HYPDHQ96EM0 354 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 PGAP3Q96FM1 320 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ZC3HAV1LQ96H79 300 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC38A3Q99624 504 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SPOCK3Q9BQ16 436 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ABHD16BQ9H3Z7 469 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 PRMT7Q9NVM4 692 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ATXN7L1Q9ULK2 861 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 MRPL11Q9Y3B7 192 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 CCL22O00626 93 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 MT-CYBP00156 380 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 NMBP08949 121 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SDC2P34741 201 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 CXCR3P49682 368 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 NHLRC3Q5JS37 347 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SFRP5Q5T4F7 317 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 HECTD2Q5U5R9 776 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 RAB11FIP2Q7L804 512 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 KRT74Q7RTS7 529 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ZER1Q7Z7L7 766 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 FAM181AQ8N9Y4 354 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 MCPH1Q8NEM0 835 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 HRASLS5Q96KN8 279 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ZNF251Q9BRH9 671 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 NKX6-2Q9C056 277 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 OR51J1Q9H342 316 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ELAC1Q9H777 363 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 GBA2Q9HCG7 927 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 LATS2Q9NRM7 1088 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ZNF670-ZNF695F2Z2N8 137 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 VPS4BO75351 444 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 OAZ2O95190 189 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 TGM6O95932 706 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 EGFP01133 1207 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 UBA1P22314 1058 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 GKP32189 559 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ALDH9A1P49189 494 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ATP12AP54707 1039 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 PRMT2P55345 433 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SF3A2Q15428 464 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms