RNA–Protein interactions for RNA: ENST00000508037.1

HMGB3P16-201, Transcript of high mobility group box 3 pseudogene 16, humanhuman

BASIC

Gene HMGB3P16, Length 287 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P16-201ENST00000508037 CBX4O00257 560 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 DSCR3O14972 297 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 HOXC11O43248 304 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 KIAA0513O60268 411 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 TLR5O60602 858 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SOCS5O75159 536 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 DUSP11O75319 330 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CCNB2O95067 398 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 LATS1O95835 1130 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 LGI1O95970 557 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SCG5P05408 212 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 STSP08842 583 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 OR56A5P0C7T3 313 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 ZDHHC11BP0C7U3 371 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 HSMCR30P0CW71 290 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 COL6A1P12109 1028 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 AKR1A1P14550 325 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 JUPP14923 745 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SPNP16150 400 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 AMD1P17707 334 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SDC1P18827 310 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 ENDOUP21128 410 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 PSMA1P25786 263 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 PTBP1P26599 531 aaKnown RBP eCLIP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 HLA-DMAP28067 261 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 GTF2E2P29084 291 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 ERP29P30040 261 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 TNFSF8P32971 234 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CSTF2P33240 577 aaKnown RBP eCLIP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CA5AP35218 305 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 NR4A2P43354 598 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CSNK1DP48730 415 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 IDH2P48735 452 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 PGFP49763 221 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 LIMK1P53667 647 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 PCBP4P57723 403 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SMIM11AP58511 58 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 RHOAP61586 193 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SELENOWP63302 87 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 FKBP1BP68106 108 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 VLDLRP98155 873 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SPIBQ01892 262 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 ACSM2AQ08AH3 577 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 DMPKQ09013 629 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 MGAT3Q09327 533 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 FCHO2Q0JRZ9 810 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 PPP1R8Q12972 351 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 NFATC2Q13469 925 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 GPR50Q13585 617 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 MBTPS1Q14703 1052 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 TAB1Q15750 504 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CPSF6Q16630 551 aaKnown RBP eCLIP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SMN1Q16637 294 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 MICAQ29983 383 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 LRRC26Q2I0M4 334 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 ZNF630Q2M218 657 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 C18orf21Q32NC0 220 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 IQCCQ4KMZ1 466 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 GCNT6Q5T4J0 391 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CPTPQ5TA50 214 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 FAM171A1Q5VUB5 890 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 RNLSQ5VYX0 342 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 RNF219Q5W0B1 726 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 FAM219BQ5XKK7 198 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 ACSM2BQ68CK6 577 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 TIGD3Q6B0B8 471 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 PLAG1Q6DJT9 500 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 OR4F3Q6IEY1 312 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 PDE12Q6L8Q7 609 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 NOXRED1Q6NXP6 359 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 MZT2BQ6NZ67 158 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 TRIM40Q6P9F5 258 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 HSDL2Q6YN16 418 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CAMKMTQ7Z624 323 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 NOXA1Q86UR1 476 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 ANKRD46Q86W74 232 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 PTOV1Q86YD1 416 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CCDC71Q8IV32 467 aaPredicted RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 LIX1LQ8IVB5 337 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 GALNT12Q8IXK2 581 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CACTIN-AS1Q8N1I8 211 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 OXR1Q8N573 874 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 IL17RCQ8NAC3 791 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 FAM46DQ8NEK8 389 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 CLHC1Q8NHS4 586 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 NPLOC4Q8TAT6 608 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 SPPL2AQ8TCT8 520 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 HASPINQ8TF76 798 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 GEMIN6Q8WXD5 167 aaKnown RBP4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 AP3S1Q92572 193 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 TTC9Q92623 222 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 REPS1Q96D71 796 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 MED30Q96HR3 178 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 C7orf34Q96L11 122 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 APOLD1Q96LR9 279 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 TSSK3Q96PN8 268 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 KCNC2Q96PR1 638 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 FEVQ99581 238 aa4.78□□□□□ -1.64
HMGB3P16-201ENST00000508037 MGLLQ99685 303 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms