RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 LCTLQ6UWM7 567 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 CTAGE6Q86UF2 777 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 SPPL2CQ8IUH8 684 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 CPSF7Q8N684 471 aaKnown RBP11.87□□□□□ -0.51
SKA1-205ENST00000494518 TMEM178AQ8NBL3 297 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 ADAMTS18Q8TE60 1221 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 RNF166Q96A37 237 aaPredicted RBP11.87□□□□□ -0.51
SKA1-205ENST00000494518 TSNARE1Q96NA8 513 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 SGPP1Q9BX95 441 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 RHBGQ9H310 441 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 LRFN1Q9P244 771 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 MEMO1Q9Y316 297 aa11.87□□□□□ -0.51
SKA1-205ENST00000494518 AKAP6Q13023 2319 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 ASPDHA6ND91 283 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 MAGEB17A8MXT2 336 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 EIF3FO00303 357 aaPredicted RBP11.86□□□□□ -0.51
SKA1-205ENST00000494518 GALR3O60755 368 aaPredicted RBP11.86□□□□□ -0.51
SKA1-205ENST00000494518 SLC25A12O75746 678 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 GUCA1CO95843 209 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 SP1P08047 785 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 NPPBP16860 134 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 MAOAP21397 527 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 GABRB3P28472 473 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 TPP2P29144 1249 aaPredicted RBP11.86□□□□□ -0.51
SKA1-205ENST00000494518 RFC3P40938 356 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 KIR3DL1P43629 444 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 CCR8P51685 355 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 SMSP52788 366 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 KRTAP10-9P60411 292 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 BTG2P78543 158 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 HYAL2Q12891 473 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 ARMC3Q5W041 872 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 SLC25A25Q6KCM7 469 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 UGT3A1Q6NUS8 523 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 SIAH3Q8IW03 269 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 ZNF295-AS1Q8N0V1 137 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 NAT8LQ8N9F0 302 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 C2CD4AQ8NCU7 369 aaPredicted RBP11.86□□□□□ -0.51
SKA1-205ENST00000494518 PLPP5Q8NEB5 264 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 AGAP11Q8TF27 550 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 THAP3Q8WTV1 239 aaPredicted RBP11.86□□□□□ -0.51
SKA1-205ENST00000494518 TBC1D20Q96BZ9 403 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 MTFMTQ96DP5 389 aaKnown RBP11.86□□□□□ -0.51
SKA1-205ENST00000494518 PTCHD1Q96NR3 888 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 OR4K3Q96R72 315 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 OR1F2PQ96R84 312 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 ARL15Q9NXU5 204 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 TAS2R13Q9NYV9 303 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 ZNF835Q9Y2P0 537 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 NEU2Q9Y3R4 380 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 SLC22A7Q9Y694 548 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 HCFC1P51610 2035 aa11.86□□□□□ -0.51
SKA1-205ENST00000494518 PABPN1LA6NDY0 278 aaKnown RBP11.85□□□□□ -0.51
SKA1-205ENST00000494518 ASNA1O43681 348 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 CLDN14O95500 239 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 MLYCDO95822 493 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 HIST1H2AGP0C0S8 130 aaPredicted RBP11.85□□□□□ -0.51
SKA1-205ENST00000494518 ZNF24P17028 368 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 ALOX12P18054 663 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 PGAM1P18669 254 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 HIST1H2ADP20671 130 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 PTGER1P34995 402 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 ITGA8P53708 1063 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 RAB8AP61006 207 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 SP140Q13342 867 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 HERC3Q15034 1050 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 KRTCAP3Q53RY4 240 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 HP1BP3Q5SSJ5 553 aaPredicted RBP11.85□□□□□ -0.51
SKA1-205ENST00000494518 LRRC8EQ6NSJ5 796 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 Q6ZPB1 254 aaPredicted RBP11.85□□□□□ -0.51
SKA1-205ENST00000494518 ZNF662Q6ZS27 426 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 PCGF5Q86SE9 256 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 RPS19BP1Q86WX3 136 aaKnown RBP11.85□□□□□ -0.51
SKA1-205ENST00000494518 LMNTD2Q8IXW0 634 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 AFAP1L2Q8N4X5 818 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 GPATCH11Q8N954 259 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 FAM98AQ8NCA5 519 aaKnown RBP11.85□□□□□ -0.51
SKA1-205ENST00000494518 ELP5Q8TE02 316 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 SREK1Q8WXA9 508 aaKnown RBP11.85□□□□□ -0.51
SKA1-205ENST00000494518 SNF8Q96H20 258 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 HIST1H2AHQ96KK5 128 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 HIST1H2AJQ99878 128 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 TRIM51Q9BSJ1 452 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 HAUS8Q9BT25 410 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 H2AFJQ9BTM1 129 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 IKZF3Q9UKT9 509 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 PCDHGB6Q9Y5F9 930 aa11.85□□□□□ -0.51
SKA1-205ENST00000494518 PHF3Q92576 2039 aaKnown RBP11.84□□□□□ -0.51
SKA1-205ENST00000494518 TRBC2A0A5B9 178 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 C4orf51C9J302 202 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 SLC16A5O15375 505 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 NRDCO43847 1150 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 NME2P1O60361 137 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 TSPAN12O95859 305 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 NME2P22392 152 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 CCND1P24385 295 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 RGS1Q08116 209 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 MSS51Q4VC12 460 aa11.84□□□□□ -0.51
SKA1-205ENST00000494518 RNASEH2BQ5TBB1 312 aaKnown RBP11.84□□□□□ -0.51
SKA1-205ENST00000494518 FGD2Q7Z6J4 655 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms