RNA–Protein interactions for RNA: ENST00000494255.5

TRA2A-209, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 1,653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-209ENST00000494255 ZNF282Q9UDV7 671 aaPredicted RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 NXT1Q9UKK6 140 aaKnown RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 TCFL5Q9UL49 500 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 RNF11Q9Y3C5 154 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 KLHL18O94889 574 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 PRKAR1AP10644 381 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 H2AFXP16104 143 aaPredicted RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 TSPAN8P19075 237 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 WT1P19544 449 aaPredicted RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 DNAJB13P59910 316 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 TGM3Q08188 693 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 CDC20Q12834 499 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 TRAF3Q13114 568 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 DDX39BQ13838 428 aaKnown RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 ZRSR2Q15696 482 aaKnown RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 COL28A1Q2UY09 1125 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 LIPMQ5VYY2 423 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 TTC19Q6DKK2 380 aaPredicted RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 COX15Q7KZN9 410 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 HDXQ7Z353 690 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 EXOC3L1Q86VI1 746 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 UTP15Q8TED0 518 aaKnown RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 SREK1Q8WXA9 508 aaKnown RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 GAL3ST3Q96A11 431 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 FAR2Q96K12 515 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 CDK15Q96Q40 435 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 SLC26A1Q9H2B4 701 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 WDR54Q9H977 334 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 SSU72Q9NP77 194 aaKnown RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 MKKSQ9NPJ1 570 aaPredicted RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 ACSS2Q9NR19 701 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 OXSMQ9NWU1 459 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 CTSFQ9UBX1 484 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 PTRH2Q9Y3E5 179 aaKnown RBP11.84□□□□□ -0.51
TRA2A-209ENST00000494255 NAALAD2Q9Y3Q0 740 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 TSC22D4Q9Y3Q8 395 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 MAP4K5Q9Y4K4 846 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 ACTL7BQ9Y614 415 aa11.84□□□□□ -0.51
TRA2A-209ENST00000494255 SCN3AQ9NY46 2000 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 FREM2Q5SZK8 3169 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 A0A088AWK7 358 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 LRIT2A6NDA9 550 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 H0YIV9 168 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 SGK494L7N484 410 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 ERI3O43414 337 aaKnown RBP11.83□□□□□ -0.52
TRA2A-209ENST00000494255 GALR3O60755 368 aaPredicted RBP11.83□□□□□ -0.52
TRA2A-209ENST00000494255 RECKO95980 971 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 CREB1P16220 341 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 ZNF10P21506 573 aaPredicted RBP11.83□□□□□ -0.52
TRA2A-209ENST00000494255 PIK3CBP42338 1070 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 NAGLUP54802 743 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 RAB8AP61006 207 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 HYAL2Q12891 473 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 LCP2Q13094 533 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 IFT88Q13099 833 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 ERV3-1Q14264 604 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 PCLAFQ15004 111 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 GGTA1PQ4G0N0 100 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 DEFB134Q4QY38 66 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 CRTC2Q53ET0 693 aaPredicted RBP11.83□□□□□ -0.52
TRA2A-209ENST00000494255 MRPL14Q6P1L8 145 aaKnown RBP11.83□□□□□ -0.52
TRA2A-209ENST00000494255 TRIM40Q6P9F5 258 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 CHSY3Q70JA7 882 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 PRSS41Q7RTY9 318 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 GPR155Q7Z3F1 870 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 VN1R5Q7Z5H4 357 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 C10orf107Q8IVU9 208 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 AFAP1L2Q8N4X5 818 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 SRFBP1Q8NEF9 429 aaKnown RBP11.83□□□□□ -0.52
TRA2A-209ENST00000494255 OR4F6Q8NGB9 312 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 OR2Y1Q8NGV0 311 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 ZNF473Q8WTR7 871 aaKnown RBP11.83□□□□□ -0.52
TRA2A-209ENST00000494255 MIEF2Q96C03 454 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 CMTM7Q96FZ5 175 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 ZNF382Q96SR6 550 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 CENPKQ9BS16 269 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 REXO4Q9GZR2 422 aaKnown RBP11.83□□□□□ -0.52
TRA2A-209ENST00000494255 KLHL31Q9H511 634 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 KCNK9Q9NPC2 374 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 C14orf105Q9NVL8 296 aa11.83□□□□□ -0.52
TRA2A-209ENST00000494255 CDC14CA4D256 554 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 FFAR3O14843 346 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 NKX2-8O15522 239 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 GPR42O15529 346 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 TYROBPO43914 113 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 TRIM13O60858 407 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 RDH16O75452 317 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 HNRNPH1P31943 449 aaKnown RBP11.82□□□□□ -0.52
TRA2A-209ENST00000494255 PKNOX1P55347 436 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 SNRPNP63162 240 aaKnown RBP11.82□□□□□ -0.52
TRA2A-209ENST00000494255 BTN3A2P78410 334 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 NKG7Q16617 165 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 TMEM35AQ53FP2 167 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 TNFAIP8L3Q5GJ75 292 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 C10orf62Q5T681 223 aaPredicted RBP11.82□□□□□ -0.52
TRA2A-209ENST00000494255 ADNP2Q6IQ32 1131 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 LETMD1Q6P1Q0 360 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 GPRIN3Q6ZVF9 776 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 RAB43Q86YS6 212 aa11.82□□□□□ -0.52
TRA2A-209ENST00000494255 AMER3Q8N944 861 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms