RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ZXDCQ2QGD7 858 aaPredicted RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 TCTE1Q5JU00 501 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 SH2D4BQ5SQS7 431 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 ZNF385CQ66K41 422 aaPredicted RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 GPRIN3Q6ZVF9 776 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 CLYBLQ8N0X4 340 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 LMNTD1Q8N9Z9 388 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 ATP6V1E2Q96A05 226 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 NACC2Q96BF6 587 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 ABHD17AQ96GS6 310 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 NRTNQ99748 197 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 MIPEPQ99797 713 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 PLCD4Q9BRC7 762 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 SGPP1Q9BX95 441 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 ATG10Q9H0Y0 220 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 NOL11Q9H8H0 719 aaKnown RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 AKIRIN1Q9H9L7 192 aaPredicted RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 PNPOQ9NVS9 261 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 MARCOQ9UEW3 520 aaPredicted RBP16.25■□□□□ 0.19
VIM-205ENST00000485947 TCFL5Q9UL49 500 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 SNX7Q9UNH6 387 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 USH1CQ9Y6N9 552 aa16.25■□□□□ 0.19
VIM-205ENST00000485947 E7ENX8 843 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 PYCARD-AS1I3L0S3 204 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 AZIN1O14977 448 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 HDAC3O15379 428 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 SRPX2O60687 465 aaPredicted RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 IGHEP01854 428 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 ENO1P06733 434 aaKnown RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 KITP10721 976 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 TSPAN8P19075 237 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 PEBP1P30086 187 aaKnown RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 CCNG1P51959 295 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 TBPL1P62380 186 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 DCDP81605 110 aaKnown RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 TAP2Q03519 686 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 PCDH1Q08174 1060 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 TRAF3Q13114 568 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 NCF4Q15080 339 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 SF1Q15637 639 aaKnown RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 LACTB2Q53H82 288 aaPredicted RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 TRIM73Q86UV7 250 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 THOC6Q86W42 341 aaKnown RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 LRRC56Q8IYG6 542 aaPredicted RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 SNX31Q8N9S9 440 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 ADAMTS17Q8TE56 1095 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 NDC1Q9BTX1 674 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 SHCBP1LQ9BZQ2 653 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 KLHL25Q9H0H3 589 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 PCBD2Q9H0N5 130 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 CCDC177Q9NQR7 707 aaPredicted RBP16.24■□□□□ 0.19
VIM-205ENST00000485947 TRPS1Q9UHF7 1281 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 PLAGL1Q9UM63 463 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 SLC22A14Q9Y267 594 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 ARL2BPQ9Y2Y0 163 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 TRAF6Q9Y4K3 522 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 PCDHGB7Q9Y5F8 929 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 SEC16AO15027 2179 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 DOPEY2Q9Y3R5 2298 aa16.24■□□□□ 0.19
VIM-205ENST00000485947 KRT87PA6NCN2 255 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 TRPC5OSA6NMA1 111 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 OR7A17O14581 309 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 UGDHO60701 494 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 ONECUT2O95948 504 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 CAPN1P07384 714 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 FURINP09958 794 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 UROSP10746 265 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 PIM1P11309 404 aaPredicted RBP16.23■□□□□ 0.19
VIM-205ENST00000485947 MAGP20916 626 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 ARFIP2P53365 341 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 GGTA1PQ4G0N0 100 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 ATP1A1-AS1Q5TC04 95 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 KANK2Q63ZY3 851 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 FAM198BQ6UWH4 519 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 LCTLQ6UWM7 567 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 PRICKLE2Q7Z3G6 844 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 MILR1Q7Z6M3 343 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 HPS6Q86YV9 775 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 MCATQ8IVS2 390 aaKnown RBP16.23■□□□□ 0.19
VIM-205ENST00000485947 ENDOVQ8N8Q3 282 aaKnown RBP16.23■□□□□ 0.19
VIM-205ENST00000485947 ANKS4BQ8N8V4 417 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 TMEM102Q8N9M5 508 aaPredicted RBP16.23■□□□□ 0.19
VIM-205ENST00000485947 CCDC197Q8NCU1 140 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 RFWD2Q8NHY2 731 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 C10orf82Q8WW14 230 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 SMPDL3AQ92484 453 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 PYCR2Q96C36 320 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 SEC16BQ96JE7 1060 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 HAUS8Q9BT25 410 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 TXLNGQ9NUQ3 528 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 ANKMY1Q9P2S6 941 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 PCDHGA9Q9Y5G4 932 aaKnown RBP16.23■□□□□ 0.19
VIM-205ENST00000485947 KCNE2Q9Y6J6 123 aa16.23■□□□□ 0.19
VIM-205ENST00000485947 CLGNO14967 610 aa16.22■□□□□ 0.19
VIM-205ENST00000485947 CRCPO75575 148 aa16.22■□□□□ 0.19
VIM-205ENST00000485947 OR4F21O95013 312 aa16.22■□□□□ 0.19
VIM-205ENST00000485947 CHEK2O96017 543 aa16.22■□□□□ 0.19
VIM-205ENST00000485947 RRADP55042 308 aa16.22■□□□□ 0.19
VIM-205ENST00000485947 AQP5P55064 265 aa16.22■□□□□ 0.19
VIM-205ENST00000485947 RELAQ04206 551 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms