RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 OR10H2O60403 315 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 GPR137BO60478 399 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 STX10O60499 249 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 FCGR3BO75015 233 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SERPINI2O75830 405 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 BBOX1O75936 387 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SLC16A8O95907 504 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 LDLRP01130 860 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 CSN3P07498 182 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 TPM1P09493 284 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 GNA11P29992 359 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SSTR2P30874 369 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 CORO1AP31146 461 aaKnown RBP3.88□□□□□ -1.79
VPS29-202ENST00000447578 SERPINB6P35237 376 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 FRKP42685 505 aaPredicted RBP3.88□□□□□ -1.79
VPS29-202ENST00000447578 MFAP3P55082 362 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 ADARP55265 1226 aaKnown RBP3.88□□□□□ -1.79
VPS29-202ENST00000447578 MTCP1P56278 107 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SPAG1Q07617 926 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 CUL3Q13618 768 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 VEZF1Q14119 521 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 MTF1Q14872 753 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 NONOQ15233 471 aaKnown RBP eCLIP3.88□□□□□ -1.79
VPS29-202ENST00000447578 KRT31Q15323 416 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 IQCCQ4KMZ1 466 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 AARDQ4LEZ3 155 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 LBHQ53QV2 105 aaPredicted RBP3.88□□□□□ -1.79
VPS29-202ENST00000447578 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.88□□□□□ -1.79
VPS29-202ENST00000447578 KLC3Q6P597 504 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 NOTUMQ6P988 496 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 CYB5D1Q6P9G0 228 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 TRIM65Q6PJ69 517 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 NHLRC1Q6VVB1 395 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 RAD9BQ6WBX8 426 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 APTXQ7Z2E3 356 aaKnown RBP3.88□□□□□ -1.79
VPS29-202ENST00000447578 DGLUCYQ7Z3D6 616 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 ARHGAP22Q7Z5H3 698 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 PIGWQ7Z7B1 504 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SLC9B2Q86UD5 537 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 GBGT1Q8N5D6 347 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 ANKRD20A12PQ8NF67 263 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 CCDC12Q8WUD4 166 aaPredicted RBP3.88□□□□□ -1.79
VPS29-202ENST00000447578 SSMEM1Q8WWF3 244 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 TAF4BQ92750 862 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 DAZLQ92904 295 aaKnown RBP3.88□□□□□ -1.79
VPS29-202ENST00000447578 PIGTQ969N2 578 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 MTBPQ96DY7 904 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SGF29Q96ES7 293 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 C5orf30Q96GV9 206 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 PANX2Q96RD6 677 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 BTBD10Q9BSF8 475 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SLC25A33Q9BSK2 321 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 CARD6Q9BX69 1037 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SPZ1Q9BXG8 430 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 OSBPL8Q9BZF1 889 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 CCSER1Q9C0I3 900 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SRD5A3Q9H8P0 318 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 C6orf50Q9HD87 102 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 DNAJC4Q9NNZ3 241 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 BARHL2Q9NY43 387 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 SPG21Q9NZD8 308 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 KLHL9Q9P2J3 617 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 TXNDC16Q9P2K2 825 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 IL19Q9UHD0 177 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 GMEB2Q9UKD1 530 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 APPL1Q9UKG1 709 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 MTF2Q9Y483 593 aaPredicted RBP3.88□□□□□ -1.79
VPS29-202ENST00000447578 A0A1B0GUL6 1792 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 MAST2Q6P0Q8 1798 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 AFF2P51816 1311 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 TAF1P21675 1872 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 NHSQ6T4R5 1651 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 SNED1Q8TER0 1413 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 KIAA1551Q9HCM1 1747 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 C13orf42A0A1B0GVH6 325 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 HYKKA2RU49 373 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 DUXAA6NLW8 204 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 PES1O00541 588 aaKnown RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 MPHOSPH10O00566 681 aaKnown RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 PRPSAP2O60256 369 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 KIF5CO60282 957 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 SOCS5O75159 536 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 NME6O75414 186 aaPredicted RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 GAGE7O76087 117 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 DDHD2O94830 711 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 GLUD1P00367 558 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 SLC4A1P02730 911 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 GYPCP04921 128 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 KRT19P08727 400 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 GAGE12FP0CL80 117 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 GAGE12GP0CL81 117 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 GAGE12IP0CL82 117 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 C8orf89P0DMQ9 161 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 PDHBP11177 359 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 VCLP18206 1134 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 TYMPP19971 482 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 SLC6A6P31641 620 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 CASP14P31944 242 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 HPDP32754 393 aaPredicted RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 PRPHP41219 470 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms