RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 MFSD1Q9H3U5 465 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 HHATLQ9HCP6 504 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 MRPL39Q9NYK5 338 aaKnown RBP7.2□□□□□ -1.26
CPSF6-202ENST00000435070 DNAJC27Q9NZQ0 273 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 TMCC3Q9ULS5 477 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 PCDHB8Q9UN66 801 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 PPIEQ9UNP9 301 aaKnown RBP7.2□□□□□ -1.26
CPSF6-202ENST00000435070 ABCA3Q99758 1704 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 TNFRSF11BO00300 401 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 RFXANKO14593 260 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 LYRM1O43325 122 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 LY75O60449 1722 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 ATG13O75143 517 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 VPS26AO75436 327 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 PRKAR1AP10644 381 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 KDELR2P33947 212 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 RAB8AP61006 207 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 GRK1Q15835 563 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 TUSC1Q2TAM9 212 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 SIRPB2Q5JXA9 342 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 MZT2BQ6NZ67 158 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 PTCHD4Q6ZW05 846 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 ADGRD2Q7Z7M1 963 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 UNC93AQ86WB7 457 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 LINC00518Q8N0U6 118 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 ZNF366Q8N895 744 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 BEST4Q8NFU0 473 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 MAL2Q969L2 176 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 NT5C3BQ969T7 300 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 C1GALT1C1Q96EU7 318 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 RADILQ96JH8 1075 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 ZIC5Q96T25 663 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 SMAD5Q99717 465 aaKnown RBP7.2□□□□□ -1.26
CPSF6-202ENST00000435070 NXF3Q9H4D5 531 aaKnown RBP7.2□□□□□ -1.26
CPSF6-202ENST00000435070 CATSPERZQ9NTU4 200 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 SSR3Q9UNL2 185 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 SLX4Q8IY92 1834 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 IGKV6D-21A0A0A0MT36 114 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 GPR39O43194 453 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 ESR1P03372 595 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 TRIM69Q86WT6 500 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 TMEM132CQ8N3T6 1108 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 RHEBL1Q8TAI7 183 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 EXOC2Q96KP1 924 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 SLC9A7Q96T83 725 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 RBCK1Q9BYM8 510 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 IFT46Q9NQC8 304 aa7.2□□□□□ -1.26
CPSF6-202ENST00000435070 CFAP20Q9Y6A4 193 aaKnown RBP7.2□□□□□ -1.26
CPSF6-202ENST00000435070 SCN4AP35499 1836 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 E2F3O00716 465 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 GLUD1P00367 558 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 NUDT7P0C024 238 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 DAOAP59103 153 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 ERVK-21P61565 698 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 LRRC74AQ0VAA2 488 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 PTPRRQ15256 657 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 CPSF6Q16630 551 aaKnown RBP eCLIP7.19□□□□□ -1.261e-6■■■■□ 26.7
CPSF6-202ENST00000435070 WSCD1Q658N2 575 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 OR4F3Q6IEY1 312 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 OR10G2Q8NGC3 310 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 OPALINQ96PE5 141 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 C11orf16Q9NQ32 467 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 LSM7Q9UK45 103 aaKnown RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 C5orf58C9J3I9 102 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 RAF1P04049 648 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 KIAA0040Q15053 153 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 DDI2Q5TDH0 399 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 C9orf57Q5W0N0 161 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 OR4L1Q8NH43 312 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 SLC9A6Q92581 669 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 RBPMSQ93062 196 aaKnown RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 SGTBQ96EQ0 304 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 TNIP3Q96KP6 325 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 TINF2Q9BSI4 451 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 TMEM30AQ9NV96 361 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 ELF5Q9UKW6 265 aaPredicted RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 AKAP8O43823 692 aaKnown RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 CCNDBP1O95273 360 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 WISP3O95389 354 aaPredicted RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 TACR1P25103 407 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 CHRNA5P30532 468 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 HMGCLP35914 325 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 VSX2P58304 361 aaPredicted RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 CSNK2BP67870 215 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 ZNF33BQ06732 778 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 INTS6LQ5JSJ4 861 aaKnown RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 B3GLCTQ6Y288 498 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 C17orf107Q6ZR85 190 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 KANSL1Q7Z3B3 1105 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 CRYBG2Q8N1P7 616 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 ZFP41Q8N8Y5 198 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 TMEM145Q8NBT3 493 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 NTAN1Q96AB6 310 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 OTUB1Q96FW1 271 aaPredicted RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 RBFOX1Q9NWB1 397 aaKnown RBP7.19□□□□□ -1.26
CPSF6-202ENST00000435070 RHCGQ9UBD6 479 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 HRH3Q9Y5N1 445 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 PRAMEF1O95521 474 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 SRCP12931 536 aa7.19□□□□□ -1.26
CPSF6-202ENST00000435070 SOAT1P35610 550 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms