RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 IMP4Q96G21 291 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 ADAD1Q96M93 576 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 NSMCE3Q96MG7 304 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PPM1MQ96MI6 270 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 NPAS1Q99742 590 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 HEMGNQ9BXL5 484 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 HDHD5Q9BXW7 423 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 FRMD8P1Q9BZ68 369 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 SLC25A51Q9H1U9 297 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 ERVMER34-1Q9H9K5 563 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 EBF2Q9HAK2 575 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 LZTFL1Q9NQ48 299 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 DNPEPQ9ULA0 475 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 RAI2Q9Y5P3 530 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 GPR179Q6PRD1 2367 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 A0A0C4DFX4 3053 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 ATXN2Q99700 1313 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PSMD11O00231 422 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 YKT6O15498 198 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 GJB3O75712 270 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 EPOP01588 193 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 WNT1P04628 370 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 HLA-DQB2P05538 268 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 THEGLP0DJG4 465 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 LYL1P12980 280 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 CSRP1P21291 193 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PTPN3P26045 913 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 MAT2AP31153 395 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 STIP1P31948 543 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 MMP12P39900 470 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 RABIFP47224 123 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 RXRGP48443 463 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 ARRB1P49407 418 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 EIF3EP60228 445 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 HSF1Q00613 529 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 OTUD4Q01804 1114 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 CDK18Q07002 472 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 CCDC173Q0VFZ6 552 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 WASHC5Q12768 1159 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 GRIK2Q13002 908 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 KIF19Q2TAC6 998 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 HLA-BQ31612 363 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 ZNF260Q3ZCT1 412 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PXDC1Q5TGL8 231 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 SEL1L3Q68CR1 1132 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 ITPRIPL1Q6GPH6 555 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 TCEAL6Q6IPX3 200 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 RNF144BQ7Z419 303 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 MDGA2Q7Z553 956 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 SLC13A5Q86YT5 568 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 MINDY1Q8N5J2 469 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 KLK6Q92876 244 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 TCEAL3Q969E4 200 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 TADA1Q96BN2 335 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 CENPTQ96BT3 561 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 KTI12Q96EK9 354 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 BMFQ96LC9 184 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 COG8Q96MW5 612 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 AGAP3Q96P47 875 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PPP1R2P1Q96PQ5 205 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 QKIQ96PU8 341 aaKnown RBP eCLIP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 MCCC1Q96RQ3 725 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 KLF6Q99612 283 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PIMREGQ9BSJ6 248 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 GTPBP2Q9BX10 602 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 TDRD1Q9BXT4 1180 aaKnown RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 CLPBQ9H078 707 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 CARD9Q9H257 536 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 GAREM1Q9H706 876 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PCDH9Q9HC56 1237 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 GDF3Q9NR23 364 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 TMEM160Q9NX00 188 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 SEPT10Q9P0V9 454 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 FAM153AQ9UHL3 310 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PACSIN2Q9UNF0 486 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-208ENST00000423463 CRYL1Q9Y2S2 319 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 CHD5Q8TDI0 1954 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 NUP205Q92621 2012 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 PLXND1Q9Y4D7 1925 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 EYSQ5T1H1 3165 aa2.44□□□□□ -2.02
VPS13A-208ENST00000423463 OTOGLQ3ZCN5 2332 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 A0A0G2JK05 382 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 LY6G6EA0A0G2JKS1 128 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 A0A0J9YYE9 177 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SPTY2D1-AS1A0A0U1RR47 76 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 A0A1B0GTQ1 180 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 LOC285095A0A1B0GVY8 99 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RGSL1A5PLK6 1076 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 C5orf60A6NFR6 353 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SAC3D1A6NKF1 404 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ANKRD66B4E2M5 251 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SOCS2O14508 198 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RAD51BO15315 384 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PSMD3O43242 534 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HNRNPRO43390 633 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 KRT38O76015 456 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ANXA9O76027 345 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RECQL5O94762 991 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TRBC1P01850 177 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 IGKV2-30P06310 120 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms