RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 NUS1Q96E22 293 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 GULP1Q9UBP9 304 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 FAM32AQ9Y421 112 aaKnown RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 LAMA1P25391 3075 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 IGLON5A6NGN9 336 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 H0YAE9 185 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 GFRA2O00451 464 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 SCAMP2O15127 329 aaKnown RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 CLCNKAP51800 687 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 SRSF11Q05519 484 aaKnown RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 CD300CQ08708 224 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 SKIV2LQ15477 1246 aaKnown RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 RGNQ15493 299 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 MPP7Q5T2T1 576 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 EGFLAMQ63HQ2 1017 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 XAGE5Q8WWM1 108 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 ARMC5Q96C12 935 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 PRR14Q9BWN1 585 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 GPR83Q9NYM4 423 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 PLEKHM1Q9Y4G2 1056 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 TRPM6Q9BX84 2022 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 ZSCAN9O15535 394 aaPredicted RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 TIMP1P01033 207 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 GP2P55259 537 aaKnown RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 ILF2Q12905 390 aaKnown RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 CYP2A13Q16696 494 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 C2orf27AQ580R0 203 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 BORAQ6PGQ7 559 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 HEATR4Q86WZ0 1026 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 AADATQ8N5Z0 425 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 OR13F1Q8NGS4 319 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 NIPSNAP1Q9BPW8 284 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 IL1RAPQ9NPH3 570 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 DAPK2Q9UIK4 370 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 MICAL3Q7RTP6 2002 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 PIPSLA2A3N6 862 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 OR52A4PA6NMU1 304 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 H3BN98 237 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 PCDH17O14917 1159 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 LATS1O95835 1130 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 BCHEP06276 602 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 GSTM1P09488 218 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 NPPBP16860 134 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 GPC1P35052 558 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 RAE1P78406 368 aaKnown RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 GSTM4Q03013 218 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 HIST2H2ACQ16777 129 aaPredicted RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 HIST2H2AA3Q6FI13 130 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 FAM217AQ8IXS0 508 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 L3MBTL4Q8NA19 623 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 PSMA8Q8TAA3 256 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 OTULINQ96BN8 352 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 TRNAU1APQ9NX07 287 aaKnown RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 PCDHB11Q9Y5F2 797 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 PLXNA4Q9HCM2 1894 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 ZNF99A8MXY4 864 aaPredicted RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 C5orf58C9J3I9 102 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 C1orf105O95561 183 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 EFEMP2O95967 443 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 KRT20P35900 424 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 MANFP55145 182 aaKnown RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 SCARB2Q14108 478 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 EXOC3L2Q2M3D2 409 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 ZNF750Q32MQ0 723 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 C11orf65Q8NCR3 313 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 ZFP90Q8TF47 636 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 MRGPRX3Q96LB0 322 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 TRMT61BQ9BVS5 477 aaKnown RBP12.85□□□□□ -0.35
VPS54-203ENST00000409558 RPS6KA6Q9UK32 745 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 PSME2Q9UL46 239 aa12.85□□□□□ -0.35
VPS54-203ENST00000409558 OR1F1O43749 312 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 PCDHGA12O60330 932 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 LILRB3O75022 631 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 IDSP22304 550 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 PSRC1Q6PGN9 363 aaPredicted RBP12.84□□□□□ -0.35
VPS54-203ENST00000409558 ADGRD2Q7Z7M1 963 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 RBM45Q8IUH3 476 aaKnown RBP12.84□□□□□ -0.35
VPS54-203ENST00000409558 TCAIMQ8N3R3 496 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 SVOPLQ8N434 492 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 TRAM1L1Q8N609 369 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 SUSD6Q92537 303 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 TFGQ92734 400 aaPredicted RBP12.84□□□□□ -0.35
VPS54-203ENST00000409558 COL26A1Q96A83 441 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 LYSMD1Q96S90 227 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 CPEB1Q9BZB8 566 aaKnown RBP12.84□□□□□ -0.35
VPS54-203ENST00000409558 KCNK12Q9HB15 430 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 CCDC177Q9NQR7 707 aaPredicted RBP12.84□□□□□ -0.35
VPS54-203ENST00000409558 ABCB10Q9NRK6 738 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 A0A1W2PRB8 838 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 SLC31A1O15431 190 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 TIA1P31483 386 aaKnown RBP eCLIP12.84□□□□□ -0.353e-6■■■□□ 18.3
VPS54-203ENST00000409558 DNAJA1P31689 397 aaKnown RBP12.84□□□□□ -0.35
VPS54-203ENST00000409558 RFX3P48380 749 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 CRISP3P54108 245 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 MYBPC3Q14896 1274 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 PRSS53Q2L4Q9 553 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 LGI4Q8N135 537 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 OR5D16Q8NGK9 328 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 WDR20Q8TBZ3 569 aa12.84□□□□□ -0.35
VPS54-203ENST00000409558 DTNBP1Q96EV8 351 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms