RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 PCDHGA4Q9Y5G9 962 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CSNK1G3Q9Y6M4 447 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 WDFY3Q8IZQ1 3526 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 KNTC1P50748 2209 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ASCC3Q8N3C0 2202 aaKnown RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 SCN3AQ9NY46 2000 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 OR2A25A4D2G3 310 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 A8MUI8 341 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ARHGAP33O14559 1287 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SIGLEC6O43699 453 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 NUDT21O43809 227 aaKnown RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 CLEC3AO75596 197 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SORBS2O94875 1100 aaKnown RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 C9P02748 559 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 PGRP06401 933 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SLC35G6P0C7Q6 338 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 GIMD1P0DJR0 217 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ALPPL2P10696 532 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 GLB1P16278 677 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 PRPS1L1P21108 318 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 S100A3P33764 101 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SOX11P35716 441 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 AHRP35869 848 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 MPLP40238 635 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ZFP36L2P47974 494 aaKnown RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 ALDH9A1P49189 494 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SEPHS1P49903 392 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CCT8P50990 548 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 MAPK12P53778 367 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CLDN8P56748 225 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 MC1RQ01726 317 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ZNF763Q0D2J5 394 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 MAPKAPK3Q16644 382 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SLC5A12Q1EHB4 618 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ZNF528Q3MIS6 628 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 TOR1AIP1Q5JTV8 583 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 FAM180BQ6P0A1 224 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 PAGE2Q7Z2X7 111 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 BMP8AQ7Z5Y6 402 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SCUBE1Q8IWY4 988 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 PARP9Q8IXQ6 854 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ULK2Q8IYT8 1036 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 FAM9CQ8IZT9 166 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ARHGAP24Q8N264 748 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 METTL4Q8N3J2 472 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 MFSD9Q8NBP5 474 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 BAHD1Q8TBE0 780 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 DNAJB14Q8TBM8 379 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ZFYVE21Q9BQ24 234 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 DUSP23Q9BVJ7 150 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 C1orf21Q9H246 121 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CLMPQ9H6B4 373 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 NT5DC2Q9H857 520 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CAPN10Q9HC96 672 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ASIC5Q9NY37 505 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 NLGN3Q9NZ94 848 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 LEF1Q9UJU2 399 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 POMT2Q9UKY4 750 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 PPT2Q9UMR5 302 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 AP1M2Q9Y6Q5 423 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CFAP54Q96N23 3096 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CROCCQ5TZA2 2017 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 OTOGLQ3ZCN5 2332 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ZNF318Q5VUA4 2279 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ASPDHA6ND91 283 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 LILRA5A6NI73 299 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 BBIP1A8MTZ0 92 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 A8MU76 341 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 NPIPB8E9PQR5 432 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 H0YGG7 62 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 P2RX6O15547 441 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CER1O95813 267 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 IL6P05231 212 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SYPP08247 313 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 IL3P08700 152 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 TPP2P29144 1249 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 SERPINB1P30740 379 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 HOXD12P35452 270 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 KIR3DL1P43629 444 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ASMTP46597 345 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CLNS1AP54105 237 aaKnown RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 VSX2P58304 361 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 ARF3P61204 181 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 PSME3P61289 254 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 BTN3A2P78410 334 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 IRX1P78414 480 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 RGS1Q08116 209 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 C2orf80Q0P641 193 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CPTPQ5TA50 214 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 OR4C11Q6IEV9 310 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 OR4F3Q6IEY1 312 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ZCCHC8Q6NZY4 707 aaKnown RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 TRIM40Q6P9F5 258 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 BNC2Q6ZN30 1099 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 VN1R4Q7Z5H5 301 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 RABEPKQ7Z6M1 372 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 ASPGQ86U10 573 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 GPR180Q86V85 440 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 C17orf82Q86X59 251 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 NUDT13Q86X67 352 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms