RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MRPL1Q9BYD6 325 aaKnown RBP17.22■□□□□ 0.35
SDC1-203ENST00000403076 SPRTNQ9H040 489 aaPredicted RBP17.22■□□□□ 0.35
SDC1-203ENST00000403076 KLHL31Q9H511 634 aa17.22■□□□□ 0.35
SDC1-203ENST00000403076 G3BP2Q9UN86 482 aaKnown RBP17.22■□□□□ 0.35
SDC1-203ENST00000403076 EFCAB7A8K855 629 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 LSM1O15116 133 aaKnown RBP17.21■□□□□ 0.35
SDC1-203ENST00000403076 ERI3O43414 337 aaKnown RBP17.21■□□□□ 0.35
SDC1-203ENST00000403076 CSO75390 466 aaKnown RBP17.21■□□□□ 0.35
SDC1-203ENST00000403076 MYO1DO94832 1006 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 TBX6O95947 436 aaPredicted RBP17.21■□□□□ 0.35
SDC1-203ENST00000403076 CTSBP07858 339 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 HNRNPH1P31943 449 aaKnown RBP17.21■□□□□ 0.35
SDC1-203ENST00000403076 PLA2G16P53816 162 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 ITGA1P56199 1179 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 RPL38P63173 70 aaKnown RBP17.21■□□□□ 0.35
SDC1-203ENST00000403076 ISXQ2M1V0 245 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 C6orf136Q5SQH8 315 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 CDCP2Q5VXM1 449 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 TRIM40Q6P9F5 258 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 LARP4Q71RC2 724 aaKnown RBP eCLIP17.21■□□□□ 0.353e-8■□□□□ 10.4
SDC1-203ENST00000403076 FNDC5Q8NAU1 212 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 OR1L3Q8NH93 324 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 MS4A6EQ96DS6 147 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 APIPQ96GX9 242 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 OR6C1Q96RD1 312 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 CMKLR1Q99788 373 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 SLC6A16Q9GZN6 736 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 CLCA2Q9UQC9 943 aa17.21■□□□□ 0.35
SDC1-203ENST00000403076 RUVBL1Q9Y265 456 aaKnown RBP17.21■□□□□ 0.35
SDC1-203ENST00000403076 E9PBE3 544 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 KLHL41O60662 606 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 SEMA3DO95025 777 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 PRPH2P23942 346 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 RAB8AP61006 207 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 HYAL2Q12891 473 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 GRM7Q14831 915 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 NDUFA9Q16795 377 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 RSPO4Q2I0M5 234 aaPredicted RBP17.21■□□□□ 0.34
SDC1-203ENST00000403076 ADPRMQ3LIE5 342 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 SPIN4Q56A73 249 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 CYB5D1Q6P9G0 228 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 ABHD13Q7L211 337 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 DGLUCYQ7Z3D6 616 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 ZFAND4Q86XD8 727 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 C1orf52Q8N6N3 182 aaKnown RBP17.21■□□□□ 0.34
SDC1-203ENST00000403076 OR2L5Q8NG80 312 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 CHTF18Q8WVB6 975 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 STON2Q8WXE9 905 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 GAL3ST3Q96A11 431 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 ZNF501Q96CX3 271 aaPredicted RBP17.21■□□□□ 0.34
SDC1-203ENST00000403076 C1orf50Q9BV19 199 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 OCIAD1Q9NX40 245 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 RARRES3Q9UL19 164 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 ARL2BPQ9Y2Y0 163 aa17.21■□□□□ 0.34
SDC1-203ENST00000403076 A0A0G2JN53 185 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 RTCAO00442 366 aaKnown RBP17.2■□□□□ 0.34
SDC1-203ENST00000403076 UBDO15205 165 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 KCNK5O95279 499 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 MSL3P1P0C860 447 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 ZNF888P0CJ79 500 aaPredicted RBP17.2■□□□□ 0.34
SDC1-203ENST00000403076 NCF2P19878 526 aaPredicted RBP17.2■□□□□ 0.34
SDC1-203ENST00000403076 SDHBP21912 280 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 SSR2P43308 183 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 MAD2L1Q13257 205 aaPredicted RBP17.2■□□□□ 0.34
SDC1-203ENST00000403076 TLDC1Q6P9B6 456 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 PAGE2Q7Z2X7 111 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 METTL4Q8N3J2 472 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 CCDC197Q8NCU1 140 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 ZNF285Q96NJ3 590 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 C17orf62Q9BQA9 187 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 COPS7BQ9H9Q2 264 aaPredicted RBP17.2■□□□□ 0.34
SDC1-203ENST00000403076 TRIM33Q9UPN9 1127 aa17.2■□□□□ 0.34
SDC1-203ENST00000403076 HYKKA2RU49 373 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 PLPP1O14494 284 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 MAPK1P28482 360 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 ERVK-8P63133 956 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 EMX2Q04743 252 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 TBL3Q12788 808 aaKnown RBP17.19■□□□□ 0.34
SDC1-203ENST00000403076 COL9A2Q14055 689 aaPredicted RBP17.19■□□□□ 0.34
SDC1-203ENST00000403076 SMU1Q2TAY7 513 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 PRTGQ2VWP7 1150 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 FAM214AQ32MH5 1076 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 RFTN2Q52LD8 501 aaPredicted RBP17.19■□□□□ 0.34
SDC1-203ENST00000403076 OR4C11Q6IEV9 310 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 ABHD17CQ6PCB6 329 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 COMMD6Q7Z4G1 85 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 SPATA19Q7Z5L4 167 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 UTP15Q8TED0 518 aaKnown RBP17.19■□□□□ 0.34
SDC1-203ENST00000403076 METTL2AQ96IZ6 378 aaKnown RBP17.19■□□□□ 0.34
SDC1-203ENST00000403076 QRFPRQ96P65 431 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 KCNC2Q96PR1 638 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 TBCDQ9BTW9 1192 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 SORBS1Q9BX66 1292 aaKnown RBP17.19■□□□□ 0.34
SDC1-203ENST00000403076 AICDAQ9GZX7 198 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 SIDT1Q9NXL6 827 aaKnown RBP17.19■□□□□ 0.34
SDC1-203ENST00000403076 HEY2Q9UBP5 337 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 EIF3LQ9Y262 564 aaKnown RBP17.19■□□□□ 0.34
SDC1-203ENST00000403076 TMED5Q9Y3A6 229 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 LOXL2Q9Y4K0 774 aa17.19■□□□□ 0.34
SDC1-203ENST00000403076 POLR3HQ9Y535 204 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms