RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 HSH2DQ96JZ2 352 aa13.97□□□□□ -0.17
TCOF1-202ENST00000377797 ZNF570Q96NI8 536 aa13.97□□□□□ -0.17
TCOF1-202ENST00000377797 VN1R3Q9BXE9 311 aa13.97□□□□□ -0.17
TCOF1-202ENST00000377797 CD320Q9NPF0 282 aa13.97□□□□□ -0.17
TCOF1-202ENST00000377797 LINC00854A0A1B0GVQ3 168 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 ZNF860A6NHJ4 632 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 HNRNPA2B1P22626 353 aaKnown RBP13.96□□□□□ -0.17
TCOF1-202ENST00000377797 ARRB1P49407 418 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-202ENST00000377797 CLDN2P57739 230 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 MS4A2Q01362 244 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 MED22Q15528 200 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 ZNF630Q2M218 657 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-202ENST00000377797 TRAF7Q6Q0C0 670 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 PDSS2Q86YH6 399 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 SPNS2Q8IVW8 549 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 CADM2Q8N3J6 435 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 NCSTNQ92542 709 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 PRSS16Q9NQE7 514 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 PCDHGA7Q9Y5G6 932 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 PCDHGA2Q9Y5H1 932 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 NUMBLQ9Y6R0 609 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 CPED1A4D0V7 1026 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 OR6C74A6NCV1 312 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 MMP12P39900 470 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 P2RY2P41231 377 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 ABATP80404 500 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 DGUOKQ16854 277 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 C9orf50Q5SZB4 431 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.96□□□□□ -0.17
TCOF1-202ENST00000377797 Q6ZNB5 142 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 COMMD6Q7Z4G1 85 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 GAL3ST4Q96RP7 486 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 CCM2LQ9NUG4 571 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-202ENST00000377797 DNAJA1P31689 397 aaKnown RBP13.96□□□□□ -0.17
TCOF1-202ENST00000377797 TMED10P49755 219 aaKnown RBP13.96□□□□□ -0.17
TCOF1-202ENST00000377797 FAM92BQ6ZTR7 304 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 AHSA2Q719I0 299 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 GKN2Q86XP6 184 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 GPR78Q96P69 363 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 APOOQ9BUR5 198 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 MRTO4Q9UKD2 239 aaKnown RBP13.96□□□□□ -0.17
TCOF1-202ENST00000377797 GPR34Q9UPC5 381 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 PCDHB3Q9Y5E6 796 aa13.96□□□□□ -0.17
TCOF1-202ENST00000377797 ANXA8P13928 327 aa13.96□□□□□ -0.18
TCOF1-202ENST00000377797 SNAPC1Q16533 368 aa13.96□□□□□ -0.18
TCOF1-202ENST00000377797 VMACQ2NL98 169 aa13.96□□□□□ -0.18
TCOF1-202ENST00000377797 CDC73Q6P1J9 531 aa13.96□□□□□ -0.18
TCOF1-202ENST00000377797 OR10G2Q8NGC3 310 aa13.96□□□□□ -0.18
TCOF1-202ENST00000377797 WDR48Q8TAF3 677 aa13.96□□□□□ -0.18
TCOF1-202ENST00000377797 CHFRQ96EP1 664 aa13.96□□□□□ -0.18
TCOF1-202ENST00000377797 IRAK3Q9Y616 596 aa13.96□□□□□ -0.18
TCOF1-202ENST00000377797 ALPPP05187 535 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 LAMP1P11279 417 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 JUNDP17535 347 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 PRKACGP22612 351 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 CLK3P49761 638 aaKnown RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 TRAF3Q13114 568 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 KLHL12Q53G59 568 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 SLC44A4Q53GD3 710 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 SBSNQ6UWP8 590 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 CCDC116Q8IYX3 515 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 ZNF480Q8WV37 535 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 GEMIN6Q8WXD5 167 aaKnown RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 NXPE3Q969Y0 559 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 DPYSL5Q9BPU6 564 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 GPATCH1Q9BRR8 931 aaKnown RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 PBX4Q9BYU1 374 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 OR5K4A6NMS3 321 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 HOXC11O43248 304 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 RGS10O43665 173 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 FADS2O95864 444 aaKnown RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 NR2F6P10588 404 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 MLLT3P42568 568 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 RPL6Q02878 288 aaKnown RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 COL9A2Q14055 689 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 INAQ16352 499 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 GTDC1Q4AE62 458 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 ADGRG6Q86SQ4 1221 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 CLECL1Q8IZS7 167 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 LGI4Q8N135 537 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 GJD3Q8N144 294 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 SLC45A3Q96JT2 553 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 RMI1Q9H9A7 625 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 APOBEC3BQ9UH17 382 aaKnown RBP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.95□□□□□ -0.18
TCOF1-202ENST00000377797 GPR45Q9Y5Y3 372 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 COMMD3-BMI1R4GMX3 469 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 TMEM150CB9EJG8 249 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 UGDHO60701 494 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 HSD17B1P14061 328 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 DEFB134Q4QY38 66 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 C1orf53Q5VUE5 145 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 MAVSQ7Z434 540 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 PDZD3Q86UT5 571 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 ZNF563Q8TA94 476 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 METTL21AQ8WXB1 218 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 CAMK1GQ96NX5 476 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 NODALQ96S42 347 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 CRISPLD2Q9H0B8 497 aa13.95□□□□□ -0.18
TCOF1-202ENST00000377797 EPB41L1Q9H4G0 881 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms