RNA–Protein interactions for RNA: ENST00000376568.7

DDR1-225, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDR1, Length 3,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-225	ENST00000376568	IL6	P05231	212 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	RPLP0	P05388	317 aa	Known RBP	12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	PGR	P06401	933 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	CYP4B1	P13584	511 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	CSTF3	Q12996	717 aa	Known RBP	12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	SPESP1	Q6UW49	350 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	RNF44	Q7L0R7	432 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	ZNF547	Q8IVP9	402 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	MMP21	Q8N119	569 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	PTCD3	Q96EY7	689 aa	Known RBP	12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	CMTM7	Q96FZ5	175 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	ADGRE2	Q9UHX3	823 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	RNF215	Q9Y6U7	377 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	GSC2	O15499	205 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	SYP	P08247	313 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	ATP6V1B1	P15313	513 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	SLC6A2	P23975	617 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	PTX3	P26022	381 aa	Predicted RBP	12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	ARRB2	P32121	409 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	IYD	Q6PHW0	289 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	EPGN	Q6UW88	154 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	ASPG	Q86U10	573 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	CAMKV	Q8NCB2	501 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	CIDEC	Q96AQ7	238 aa	Predicted RBP	12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	ZDHHC12	Q96GR4	267 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	CNBD2	Q96M20	576 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	ZDHHC5	Q9C0B5	715 aa		12.98	□□□□□ -0.33
DDR1-225	ENST00000376568	METTL12	A8MUP2	240 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	KPNA4	O00629	521 aa	Predicted RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	ZNF888	P0CJ79	500 aa	Predicted RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	LAMP1	P11279	417 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	HLA-B	Q31612	363 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	GLYAT	Q6IB77	296 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	USP30	Q70CQ3	517 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	OR5T3	Q8NGG3	340 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	MAL2	Q969L2	176 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	ITCH	Q96J02	903 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	FBRS	Q9HAH7	460 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	SLAMF8	Q9P0V8	285 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568		H3BN98	237 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	STX16	O14662	325 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	GPR19	Q15760	415 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	SYT16	Q17RD7	645 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	SAMD4B	Q5PRF9	694 aa	Known RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	FAM217A	Q8IXS0	508 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	ZNF382	Q96SR6	550 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	PCBD2	Q9H0N5	130 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	MVB12B	Q9H7P6	319 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	GTPBP1	O00178	669 aa	Known RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	TAPBP	O15533	448 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	CHRM5	P08912	532 aa	Predicted RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	ZCCHC18	P0CG32	403 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	XRCC1	P18887	633 aa	Predicted RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	OTX2	P32243	289 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	CORO7	P57737	925 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	C3orf38	Q5JPI3	329 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	SRFBP1	Q8NEF9	429 aa	Known RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	OR6Y1	Q8NGX8	325 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	MZB1	Q8WU39	189 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	CADM1	Q9BY67	442 aa	Known RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	P2RY12	Q9H244	342 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	EXO5	Q9H790	373 aa		12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	GEMIN8	Q9NWZ8	242 aa	Known RBP	12.97	□□□□□ -0.33
DDR1-225	ENST00000376568	FAM227A	F5H4B4	570 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	VILL	O15195	856 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	KLK3	P07288	261 aa	Predicted RBP	12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	RPS3	P23396	243 aa	Known RBP eCLIP	12.96	□□□□□ -0.33	4e-7	■■■□□ 18.1
DDR1-225	ENST00000376568	SUOX	P51687	545 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	XK	P51811	444 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	TMEM64	Q6YI46	380 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	ZBTB49	Q6ZSB9	765 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	TMEM26	Q6ZUK4	368 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	DEPDC7	Q96QD5	511 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	RAB11FIP5	Q9BXF6	653 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	C1QTNF1	Q9BXJ1	281 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	ACPT	Q9BZG2	426 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	EBF2	Q9HAK2	575 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	FZD4	Q9ULV1	537 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	SHISA7	A6NL88	538 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	SOBP	A7XYQ1	873 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	E2F3	O00716	465 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	POLR1C	O15160	346 aa	Predicted RBP	12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	PDPK1	O15530	556 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	ENG	P17813	658 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	LAPTM5	Q13571	262 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	ZNHIT3	Q15649	155 aa	Predicted RBP	12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	TMEM164	Q5U3C3	297 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	CGB2	Q6NT52	195 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	MAGEE2	Q8TD90	523 aa	Predicted RBP	12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	EVA1B	Q9NVM1	165 aa		12.96	□□□□□ -0.33
DDR1-225	ENST00000376568	HAT1	O14929	419 aa		12.96	□□□□□ -0.34
DDR1-225	ENST00000376568	HS6ST1	O60243	411 aa		12.96	□□□□□ -0.34
DDR1-225	ENST00000376568	MPC1L	P0DKB6	136 aa		12.96	□□□□□ -0.34
DDR1-225	ENST00000376568	AVPR1B	P47901	424 aa		12.96	□□□□□ -0.34
DDR1-225	ENST00000376568	GANAB	Q14697	944 aa	Known RBP	12.96	□□□□□ -0.34
DDR1-225	ENST00000376568	MTX3	Q5HYI7	312 aa		12.96	□□□□□ -0.34
DDR1-225	ENST00000376568	LPCAT4	Q643R3	524 aa		12.96	□□□□□ -0.34
DDR1-225	ENST00000376568	PRR22	Q8IZ63	422 aa		12.96	□□□□□ -0.34

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