RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 FAM122AQ96E09 287 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 REXO5Q96IC2 774 aaKnown RBP14.94□□□□□ -0.02
CCDC40-202ENST00000374876 CCDC138Q96M89 665 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 VPS35Q96QK1 796 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 MAGIXQ9H6Y5 334 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 TM9SF3Q9HD45 589 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 PRM3Q9NNZ6 103 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 AASDHPPTQ9NRN7 309 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 GPRC5BQ9NZH0 403 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 VPS29Q9UBQ0 182 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 LAMA1P25391 3075 aa14.94□□□□□ -0.02
CCDC40-202ENST00000374876 EVPLLA8MZ36 301 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 E7EQ34 232 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 RECQL5O94762 991 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 B3GALT4O96024 378 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 CFIP05156 583 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 MYCLP1P12525 358 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 HOXB6P17509 224 aaKnown RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 PCSK6P29122 969 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 PTPN6P29350 595 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 GZMMP51124 257 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 CTSCP53634 463 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 NAE1Q13564 534 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 DDX39BQ13838 428 aaKnown RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 SF3A2Q15428 464 aaKnown RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 DPY19L1Q2PZI1 675 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 ZBED5Q49AG3 693 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 TRIM61Q5EBN2 209 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 DOK6Q6PKX4 331 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 AGTRAPQ6RW13 159 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 C10orf111Q8N326 155 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 SVOPLQ8N434 492 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 RDH12Q96NR8 316 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 MUS81Q96NY9 551 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 MTERF1Q99551 399 aaKnown RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 CCM2Q9BSQ5 444 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 SEMA4GQ9NTN9 838 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 STOX2Q9P2F5 926 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 UTS2RQ9UKP6 389 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 LRRK1Q38SD2 2015 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 KNL1Q8NG31 2342 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 H0Y8X5 98 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 LZTS3O60299 673 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 GNSP15586 552 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 HOXB9P17482 250 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 CD22P20273 847 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 TGM1P22735 817 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 PRLHRP49683 370 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 IST1P53990 364 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 CLDN2P57739 230 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 SRSF11Q05519 484 aaKnown RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 TMEM115Q12893 351 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 LAPTM5Q13571 262 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 DOC2AQ14183 400 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 DUOXA1Q1HG43 343 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 PEAR1Q5VY43 1037 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-202ENST00000374876 WDR20Q8TBZ3 569 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 FCRL1Q96LA6 429 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 FOPNLQ96NB1 174 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 ING2Q9H160 280 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 CIDEBQ9UHD4 219 aa14.93□□□□□ -0.02
CCDC40-202ENST00000374876 PRMT3O60678 531 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 MYO1DO94832 1006 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 WNT1P04628 370 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 HNF4AP41235 474 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 MAPK9P45984 424 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 BDKRB1P46663 353 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 TRPC1P48995 793 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 VAC14Q08AM6 782 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 EPS8Q12929 822 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 TMEM220Q6QAJ8 160 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 ERI1Q8IV48 349 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 EID3Q8N140 333 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 OR7A2PQ8NGA2 310 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 CDC26Q8NHZ8 85 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 PANX1Q96RD7 426 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 RBM4BQ9BQ04 359 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 RBM4Q9BWF3 364 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 REXO4Q9GZR2 422 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 TOR3AQ9H497 397 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 SMURF2Q9HAU4 748 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 MBNL1Q9NR56 388 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 RUVBL1Q9Y265 456 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 CROCCQ5TZA2 2017 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 PRAMEF26H0Y7S4 382 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 FPGTO14772 594 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 E2F6O75461 281 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 ZNF806P0C7X5 589 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 COX7A2P14406 83 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 IL1RNP18510 177 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 HNRNPA2B1P22626 353 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 PBLDP30039 288 aaPredicted RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 HNRNPFP52597 415 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 RACK1P63244 317 aaKnown RBP14.92□□□□□ -0.02
CCDC40-202ENST00000374876 ACSM2AQ08AH3 577 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 MYBPC3Q14896 1274 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 CCSMST1Q4G0I0 132 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 TTC23Q5W5X9 447 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 ACSM2BQ68CK6 577 aa14.92□□□□□ -0.02
CCDC40-202ENST00000374876 GRHL2Q6ISB3 625 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms