RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SOX11P35716 441 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 ACTR1BP42025 376 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 ARSFP54793 590 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 RAB15P59190 212 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 ACTR1AP61163 376 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 TAP2Q03519 686 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 DAG1Q14118 895 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 FZD2Q14332 565 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 MYBPC3Q14896 1274 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 RAB39AQ14964 217 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 IMPG1Q17R60 797 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 SMU1Q2TAY7 513 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 GPR107Q5VW38 600 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 DLEU7Q6UYE1 221 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 TMEFF1Q8IYR6 380 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 RGL4Q8IZJ4 473 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 SETD7Q8WTS6 366 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 HSPA12BQ96MM6 686 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 SH3GL1Q99961 368 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 SGPP1Q9BX95 441 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 RAB11FIP5Q9BXF6 653 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 ING2Q9H160 280 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 PIF1Q9H611 641 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 ZNF490Q9ULM2 529 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 CDC14AQ9UNH5 594 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 EIF3LQ9Y262 564 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 SPAG17Q6Q759 2223 aa12.64□□□□□ -0.39
SQSTM1-201ENST00000360718 SPTY2D1-AS1A0A0U1RR47 76 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 MANBAO00462 879 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 GSTA4O15217 222 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 PRSS23O95084 383 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 HPRP00739 348 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 CELA2BP08218 269 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 G6PDP11413 515 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 IMPDH2P12268 514 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 JAK1P23458 1154 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 HNF4AP41235 474 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 HTR6P50406 440 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 BLKP51451 505 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 ABRAXAS2Q15018 415 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 AP5B1Q2VPB7 878 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 SGO1Q5FBB7 561 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 TTC23Q5W5X9 447 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 WASH2PQ6VEQ5 465 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 MAMSTRQ6ZN01 415 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 RNF165Q6ZSG1 346 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 NRROSQ86YC3 692 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 LRRC56Q8IYG6 542 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 CLEC4FQ8N1N0 589 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 FNDC8Q8TC99 324 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 POP5Q969H6 163 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 SH3KBP1Q96B97 665 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 PPM1MQ96MI6 270 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 MENTQ9BUN1 341 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 PCBD2Q9H0N5 130 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 GORASP2Q9H8Y8 452 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 WASH6PQ9NQA3 447 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 SPATA6Q9NWH7 488 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 IFT80Q9P2H3 777 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 PCDHGA11Q9Y5H2 935 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 GOLGA4Q13439 2230 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 hCG_2014768A0A024R1R8 64 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 SH3PXD2BA1X283 911 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 E7EQ34 232 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 LSM1O15116 133 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 THRBP10828 461 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 JUPP14923 745 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 GGT1P19440 569 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 EEF1B2P24534 225 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 NDUFS1P28331 727 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 TUBA3CQ13748 450 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 PLCL1Q15111 1095 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 RPE65Q16518 533 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 RBM48Q5RL73 367 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 OTUD3Q5T2D3 398 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 KLHL35Q6PF15 583 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 ZNF773Q6PK81 442 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 ZDHHC13Q8IUH4 622 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 C2orf73Q8N5S3 287 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 C1orf216Q8TAB5 229 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 SELENOMQ8WWX9 145 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 AURKBQ96GD4 344 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 CCDC115Q96NT0 180 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 CAMK1GQ96NX5 476 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 HBEGFQ99075 208 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 DCUN1D5Q9BTE7 237 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 GSDMCQ9BYG8 508 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 PRM3Q9NNZ6 103 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 TBCCD1Q9NVR7 557 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 SH2B3Q9UQQ2 575 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 V9GYQ6 96 aa12.63□□□□□ -0.39
SQSTM1-201ENST00000360718 A0A1W2PR77 199 aa12.62□□□□□ -0.39
SQSTM1-201ENST00000360718 H3BMQ9 156 aa12.62□□□□□ -0.39
SQSTM1-201ENST00000360718 TDGF1P13385 188 aa12.62□□□□□ -0.39
SQSTM1-201ENST00000360718 CTSEP14091 401 aa12.62□□□□□ -0.39
SQSTM1-201ENST00000360718 NPPBP16860 134 aa12.62□□□□□ -0.39
SQSTM1-201ENST00000360718 JUNBP17275 347 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-201ENST00000360718 HOXB6P17509 224 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-201ENST00000360718 CD38P28907 300 aa12.62□□□□□ -0.39
SQSTM1-201ENST00000360718 STT3AP46977 705 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms