RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GPN2Q9H9Y4 310 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 AASSQ9UDR5 926 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 RAPGEFL1Q9UHV5 662 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 TMEM98Q9Y2Y6 226 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 PRKAB1Q9Y478 270 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 AP1M2Q9Y6Q5 423 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 HSPE1-MOB4S4R3N1 261 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 VEGFDO43915 354 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 C6orf47O95873 294 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 ITIH1P19827 911 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 EPHA2P29317 976 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 CRATP43155 626 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 C2orf80Q0P641 193 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 TEAD4Q15561 434 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 FAHD1Q6P587 224 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 FBXO46Q6PJ61 603 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 ERN2Q76MJ5 926 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 B3GNT8Q7Z7M8 397 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 ZC3H7AQ8IWR0 971 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 METTL4Q8N3J2 472 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 PLA2G15Q8NCC3 412 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 SETD7Q8WTS6 366 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 CIDECQ96AQ7 238 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 FKBP10Q96AY3 582 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 IL17FQ96PD4 163 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 MYOCQ99972 504 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 OR52A5Q9H2C5 316 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 ATAD3AQ9NVI7 634 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 NDRG4Q9ULP0 352 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 KIAA1549LQ6ZVL6 1849 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 ETFAP13804 333 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 FMO3P31513 532 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 PIK3CBP42338 1070 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 CASP9P55211 416 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 EIF4HQ15056 248 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 LAIR1Q6GTX8 287 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 FAM71E1Q6IPT2 247 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 TMC5Q6UXY8 1006 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 TSEN54Q7Z6J9 526 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 MMAAQ8IVH4 418 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 PHOSPHO2Q8TCD6 241 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 PPCDCQ96CD2 204 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 ERLEC1Q96DZ1 483 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 DGCR6LQ9BY27 220 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 MYNNQ9NPC7 610 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 DPP7Q9UHL4 492 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 PSME2Q9UL46 239 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 GMPPBQ9Y5P6 360 aa19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 MUC22E2RYF6 1773 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-203ENST00000359902 PI15O43692 258 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 GPR37L1O60883 481 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 TNFRSF21O75509 655 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 C9P02748 559 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 KLK1P06870 262 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 MYOGP15173 224 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 GALK1P51570 392 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 TAS2R50P59544 299 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 BNIP3Q12983 259 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 PRSS53Q2L4Q9 553 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 ANGPTL8Q6UXH0 198 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 UNC5DQ6UXZ4 953 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 ATG16L2Q8NAA4 619 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 EPYCQ99645 322 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 SLC35A5Q9BS91 424 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 CCDC90BQ9GZT6 254 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 DYRK4Q9NR20 520 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 KRT84Q9NSB2 600 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 ASF1AQ9Y294 204 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 PADI2Q9Y2J8 665 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 INMTO95050 263 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 JUNDP17535 347 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 SELENOWP63302 87 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 VN1R5Q7Z5H4 357 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 C2orf73Q8N5S3 287 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 OR5AR1Q8NGP9 310 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 HERVK_113Q902F9 699 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 ASB16Q96NS5 453 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 FUNDC2Q9BWH2 189 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 KIF17Q9P2E2 1029 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 PLAGL1Q9UM63 463 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 PCDHGB1Q9Y5G3 927 aa19.97■□□□□ 0.79
CCDC88B-203ENST00000359902 A0A0J9YVX5 310 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 ANTXRLA6NF34 631 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 GP2P55259 537 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 CXCR4P61073 352 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 EMX1Q04741 257 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 PSRC1Q6PGN9 363 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 CROCCP3Q8IVE0 287 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 OR52N2Q8NGI0 321 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 APOL4Q9BPW4 351 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 DUSP21Q9H596 190 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 IRAK4Q9NWZ3 460 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 ERVK-18Q9QC07 812 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 SPASTQ9UBP0 616 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 WARS2Q9UGM6 360 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 TSC22D4Q9Y3Q8 395 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 DNAJB5O75953 348 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 RB1P06400 928 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 HTR1BP28222 390 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 RPL3P39023 403 aaKnown RBP19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms