RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 HDDC3Q8N4P3 179 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 OR6Q1Q8NGQ2 317 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 GLYATL1Q969I3 302 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 FAM120BQ96EK7 910 aaKnown RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 EGFL8Q99944 293 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 BCL7BQ9BQE9 202 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 PSD2Q9BQI7 771 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CPPED1Q9BRF8 314 aaPredicted RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 INPP5KQ9BT40 448 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 PHF7Q9BWX1 381 aaPredicted RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CD244Q9BZW8 370 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 RIBC2Q9H4K1 309 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 POLE4Q9NR33 117 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 LATS2Q9NRM7 1088 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 C1orf109Q9NX04 203 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 NFKBIL1Q9UBC1 381 aaPredicted RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 OPTCQ9UBM4 332 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 DLGAP4Q9Y2H0 992 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 OARD1Q9Y530 152 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 ANGPTL3Q9Y5C1 460 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 PRR23AA6NEV1 266 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 SLC28A1O00337 649 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 LILRB5O75023 590 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 FADS2O95864 444 aaKnown RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 IL1RNP18510 177 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 PSMB9P28065 219 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 PTPN6P29350 595 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CDKN2CP42773 168 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 HSPA14Q0VDF9 509 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 TMEM115Q12893 351 aaPredicted RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CCINQ13939 588 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 SMAD2Q15796 467 aaKnown RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 WSCD2Q2TBF2 565 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CATSPEREQ5SY80 951 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 LRIF1Q5T3J3 769 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 AGAP7PQ5VUJ5 663 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 PLEKHG7Q6ZR37 379 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 ZNF547Q8IVP9 402 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 CHCHD4Q8N4Q1 142 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 ZBTB2Q8N680 514 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 RPL3LQ92901 407 aaKnown RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 HPS1Q92902 700 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 MYOCQ99972 504 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 ZSCAN5AQ9BUG6 496 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 SLIRPQ9GZT3 109 aaKnown RBP8.28□□□□□ -1.08
TRIM55-204ENST00000353317 PRKAB1Q9Y478 270 aa8.28□□□□□ -1.08
TRIM55-204ENST00000353317 GOLGA4Q13439 2230 aaKnown RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 TSPAN6O43657 245 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ERN1O75460 977 aaKnown RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 DIRAS1O95057 198 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 PAK4O96013 591 aaPredicted RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 MT-ND2P03891 347 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 HOXB9P17482 250 aaPredicted RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 PDHA2P29803 388 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 MLLT1Q03111 559 aaPredicted RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 GTF2H3Q13889 308 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 KEAP1Q14145 624 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 SMU1Q2TAY7 513 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ZNF658BQ4V348 819 aaPredicted RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 LYPLAL1Q5VWZ2 237 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 KDM4DQ6B0I6 523 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 CYP2U1Q7Z449 544 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ADCK1Q86TW2 530 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 NLRP8Q86W28 1048 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 GALNT13Q8IUC8 556 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 SLC22A15Q8IZD6 547 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ZNF540Q8NDQ6 660 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 SETD9Q8NE22 299 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 RPLP0P6Q8NHW5 317 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 USP7Q93009 1102 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 UBE2FQ969M7 185 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 NUS1Q96E22 293 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 FAM126AQ9BYI3 521 aaPredicted RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ASPSCR1Q9BZE9 553 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ACPTQ9BZG2 426 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 KCNH6Q9H252 994 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ACOT13Q9NPJ3 140 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 TRPV5Q9NQA5 729 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 WWOXQ9NZC7 414 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 TMEM98Q9Y2Y6 226 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 TPRKBQ9Y3C4 175 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 WDR87Q6ZQQ6 2873 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 C1QTNF3-AMACRE9PGA6 284 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 PSMD11O00231 422 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 MANBAO00462 879 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 LZTS3O60299 673 aaPredicted RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 KDM1AO60341 852 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ZNF682O95780 498 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ALOX5P09917 674 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 EBLN1P0CF75 366 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 HOXB2P14652 356 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 TACR1P25103 407 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 PREPP48147 710 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 SERPINB10P48595 397 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 CXCR4P61073 352 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 ELP6Q0PNE2 266 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 BOP1Q14137 746 aaKnown RBP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 MAPK11Q15759 364 aa8.27□□□□□ -1.09
TRIM55-204ENST00000353317 CPSF6Q16630 551 aaKnown RBP eCLIP8.27□□□□□ -1.09
TRIM55-204ENST00000353317 GALNT10Q86SR1 603 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms