RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CASP12Q6UXS9 341 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 FGD2Q7Z6J4 655 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 EXOC3L1Q86VI1 746 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 RNF175Q8N4F7 328 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SVOPQ8N4V2 548 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 RNF157Q96PX1 679 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PSKH2Q96QS6 385 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ALOXE3Q9BYJ1 711 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 USE1Q9NZ43 259 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 DCDC2Q9UHG0 476 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SNX5Q9Y5X3 404 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 LYVE1Q9Y5Y7 322 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 MANBAO00462 879 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 LATO43561 262 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ABLIM3O94929 683 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 LTA4HP09960 611 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SPATA31C1P0DKV0 1188 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PPIBP23284 216 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 CALRP27797 417 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 GKP32189 559 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ATP5J2P56134 94 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 CDK3Q00526 305 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 POU4F3Q15319 338 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 KCNJ8Q15842 424 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 HYIQ5T013 277 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SLC25A25Q6KCM7 469 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 TRPM8Q7Z2W7 1104 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SYVN1Q86TM6 617 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 BDH2Q9BUT1 245 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 RASSF4Q9H2L5 321 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PCDHB16Q9NRJ7 776 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 OR6C2Q9NZP2 312 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM216Q9P0N5 145 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PTBP2Q9UKA9 531 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 NFAT5O94916 1531 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 A0A0U1RQJ8 604 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 C19orf67A6NJJ6 358 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 PTGESO14684 152 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 ST3GAL4Q11206 333 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 STX3Q13277 289 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 CPTPQ5TA50 214 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 VWA5B1Q5TIE3 1220 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 DENND5AQ6IQ26 1287 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 RGS9BPQ6ZS82 235 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 LARP4Q71RC2 724 aaKnown RBP eCLIP8.09□□□□□ -1.12
HMGB1-203ENST00000341423 CMTM4Q8IZR5 234 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 APCDD1Q8J025 514 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 DUSP13Q9UII6 198 aa8.09□□□□□ -1.12
HMGB1-203ENST00000341423 CUL9Q8IWT3 2517 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 PLOD2O00469 737 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 ADAMTS3O15072 1205 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 IL1RNP18510 177 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 IHHQ14623 411 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 CHST14Q8NCH0 376 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 FBXO30Q8TB52 745 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF845Q96IR2 970 aaPredicted RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 C3orf30Q96M34 536 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 TMEM79Q9BSE2 394 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 EPB41L4BQ9H329 900 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 ZMAT5Q9UDW3 170 aaKnown RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 GOLGA8KD6RF30 607 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 BDKRB1P46663 353 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 RIDAP52758 137 aaKnown RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 GRTP1Q5TC63 336 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 CWF19L1Q69YN2 538 aaKnown RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 GUSBP11Q6P575 273 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 TMC3Q7Z5M5 1100 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 MTDHQ86UE4 582 aaKnown RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 CENPLQ8N0S6 344 aaPredicted RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 NATD1Q8N6N6 113 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 SLC2A12Q8TD20 617 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 PCYT2Q99447 389 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 KLF16Q9BXK1 252 aaPredicted RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 HDAC8Q9BY41 377 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 CDCP1Q9H5V8 836 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 CD93Q9NPY3 652 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 DUOX1Q9NRD9 1551 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 ALOX12BO75342 701 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 SPAG7O75391 227 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 BCKDHBP21953 392 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 KDELR1P24390 212 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 NCBP2P52298 156 aaKnown RBP eCLIP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 CLRN1P58418 232 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 TAS2R41P59536 307 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 KIAA1024LP59773 190 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 TMIGD1Q6UXZ0 262 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 RETREG3Q86VR2 466 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 THAP2Q9H0W7 228 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 SEMA4BQ9NPR2 832 aaPredicted RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF346Q9UL40 294 aaKnown RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 NDRG4Q9ULP0 352 aaKnown RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 RNF212BA8MTL3 300 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 RENP00797 406 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 CAPN1P07384 714 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 PTX3P26022 381 aaPredicted RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 NR0B1P51843 470 aaKnown RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF77Q15935 545 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 HDXQ7Z353 690 aa8.08□□□□□ -1.12
HMGB1-203ENST00000341423 ISG20Q96AZ6 181 aaKnown RBP8.08□□□□□ -1.12
HMGB1-203ENST00000341423 TBATAQ96M53 351 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms