RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZDHHC5Q9C0B5 715 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 ARMC7Q9H6L4 198 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 PRDM8Q9NQV8 689 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 GPATCH2Q9NW75 528 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 SH3GLB1Q9Y371 365 aa9.93□□□□□ -0.82
LIMA1-201ENST00000341247 CXorf51AA0A1B0GTR3 108 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 SH3BP5O60239 455 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 CDK5R2Q13319 367 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 PRAMEF14Q5SWL7 426 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF691Q5VV52 312 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 PRAMEF13Q5VWM6 474 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 EGFLAMQ63HQ2 1017 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 TANGO2Q6ICL3 276 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 ERN2Q76MJ5 926 aaKnown RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 NLRP8Q86W28 1048 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 WFIKKN2Q8TEU8 576 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 C16orf78Q8WTQ4 265 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 TFGQ92734 400 aaPredicted RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 HDAC2Q92769 488 aaKnown RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 HHIPQ96QV1 700 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 MACROD1Q9BQ69 325 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 XKR8Q9H6D3 395 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 TMEM184CQ9NVA4 438 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 USE1Q9NZ43 259 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 RHCGQ9UBD6 479 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 H7BY64 318 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 J3KTA2 159 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 M0QX08 132 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 M0R129 80 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 NFATC1O95644 943 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 NUP107P57740 925 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 GPM6BQ13491 265 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 MPEG1Q2M385 716 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 GAB4Q2WGN9 574 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 FBXO46Q6PJ61 603 aaPredicted RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 NXPE4Q6UWF7 544 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 CBLL1Q75N03 491 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 EIF3MQ7L2H7 374 aaKnown RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 NRSN1Q8IZ57 195 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 SYNPOQ8N3V7 929 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 OR13F1Q8NGS4 319 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 B4GALNT2Q8NHY0 566 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 CHFRQ96EP1 664 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 FCRL1Q96LA6 429 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 PRAP1Q96NZ9 151 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 F2RL3Q96RI0 385 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 NODALQ96S42 347 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 REEP4Q9H6H4 257 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 BRF2Q9HAW0 419 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 PREBQ9HCU5 417 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 TM9SF3Q9HD45 589 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 TIMMDC1Q9NPL8 285 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 MIEF1Q9NQG6 463 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 C1orf226A1L170 272 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 MID1O15344 667 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 HOXC11O43248 304 aaPredicted RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 PRMT3O60678 531 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 FADS2O95864 444 aaKnown RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 PAK4O96013 591 aaPredicted RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 VIPP01282 170 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 DCKP27707 260 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 DNAJA1P31689 397 aaKnown RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 SEC13P55735 322 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 GANABQ14697 944 aaKnown RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 MYBPC3Q14896 1274 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 SKIV2LQ15477 1246 aaKnown RBP9.92□□□□□ -0.82
LIMA1-201ENST00000341247 TERB1Q8NA31 727 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 C11orf65Q8NCR3 313 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 GANCQ8TET4 914 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 NRBF2Q96F24 287 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 ASB16Q96NS5 453 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 CSF3RQ99062 836 aa9.92□□□□□ -0.82
LIMA1-201ENST00000341247 KIF26AQ9ULI4 1882 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 WASHC1A8K0Z3 465 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 J3QRK9 145 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 TOR1BO14657 336 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PAPLNO95428 1278 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 CCNA2P20248 432 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 MAGEA2P43356 314 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SOX9P48436 509 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SLC5A12Q1EHB4 618 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PAGE2BQ5JRK9 111 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 RBM48Q5RL73 367 aaKnown RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 ANXA8L1Q5VT79 327 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 TNFAIP8L2Q6P589 184 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 ERICH5Q6P6B1 374 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 TMIGD1Q6UXZ0 262 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 WASH2PQ6VEQ5 465 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 B3GNT8Q7Z7M8 397 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 HMGN2P46Q86SG4 172 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 AMZ2Q86W34 360 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 OR52E4Q8NGH9 312 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 ARMC5Q96C12 935 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 OTUB1Q96FW1 271 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PPP1R16AQ96I34 528 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 MAGEB10Q96LZ2 347 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 ADPRHL2Q9NX46 363 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 RHBDL2Q9NX52 303 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SERGEFQ9UGK8 458 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 HCN2Q9UL51 889 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms