RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SLC39A13Q96H72 371 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 C1orf74Q96LT6 269 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SPON2Q9BUD6 331 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 TAPBPLQ9BX59 468 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 GLTPQ9NZD2 209 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 NDUFAF4Q9P032 175 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 MAN2B2Q9Y2E5 1009 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 PCDHGB3Q9Y5G1 929 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 UNC80Q8N2C7 3258 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 I3L521 148 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 RFXAPO00287 272 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 PRLP01236 227 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SDHBP21912 280 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC9A3P48764 834 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 AP2S1P53680 142 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 RUNX1T1Q06455 604 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 MAD2L1Q13257 205 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SNTA1Q13424 505 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 DSC3Q14574 896 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 PTGES3Q15185 160 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 MPPE1Q53F39 396 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 BBS7Q8IWZ6 715 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 TCTE3Q8IZS6 198 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 LGI4Q8N135 537 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 OR8H3Q8N146 312 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 GPRC5AQ8NFJ5 357 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 TTC9Q92623 222 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 AIFM2Q9BRQ8 373 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 TMEM248Q9NWD8 314 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 AFF4Q9UHB7 1163 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 LOC102723532A0A0G2JNH3 316 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 PRAMEF25A6NGN4 478 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 OR7A10O76100 309 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 B3GAT3O94766 335 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SMIM10L2AP0DMW4 78 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SMIM10L2BP0DMW5 78 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 CCL23P55773 120 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 TBX4P57082 545 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 CYP4F8P98187 520 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SPIBQ01892 262 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 TNK1Q13470 666 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 ARHGEF7Q14155 803 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 GANABQ14697 944 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 UAP1L1Q3KQV9 507 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 MLIPQ5VWP3 458 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 TRIM46Q7Z4K8 759 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SERPINA11Q86U17 422 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 PLCZ1Q86YW0 608 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SYT14Q8NB59 555 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SELENOMQ8WWX9 145 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 CRELD1Q96HD1 420 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 COPS8Q99627 209 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 PDGFAP04085 211 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 MMP3P08254 477 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 GSTM1P09488 218 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 SMPD1P17405 629 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 NUDT1P36639 197 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 SOX9P48436 509 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 CSTF3Q12996 717 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 POU4F3Q15319 338 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 P2RY14Q15391 338 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 LEXMQ3ZCV2 418 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 LDLRAD1Q5T700 205 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 PTCHD4Q6ZW05 846 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 KCNJ9Q92806 393 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 UPRTQ96BW1 309 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 ZBED6CLQ96FA7 236 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 MSANTD3Q96H12 275 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 EPYCQ99645 322 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 C1QTNF7Q9BXJ2 289 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 TRIM45Q9H8W5 580 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 DNAJC27Q9NZQ0 273 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 PIKFYVEQ9Y2I7 2098 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 OTOFQ9HC10 1997 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 C2orf81A6NN90 581 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 WASHC1A8K0Z3 465 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 WASH4PA8MWX3 477 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 SUV39H1O43463 412 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 PLOD3O60568 738 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 GCM2O75603 506 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 C1QBP02746 253 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 HLA-EP13747 358 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 PCSK1P29120 753 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 CNR2P34972 360 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 IL10RBQ08334 325 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 CCDC85BQ15834 202 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 CCL14Q16627 93 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 TTLL9Q3SXZ7 439 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 TIMM50Q3ZCQ8 353 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 TOR1AIP1Q5JTV8 583 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 C22orf42Q6IC83 251 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF598Q86UK7 904 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 GPR65Q8IYL9 337 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 OR9Q1Q8NGQ5 310 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 C17orf62Q9BQA9 187 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 ACAT2Q9BWD1 397 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 CD244Q9BZW8 370 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 CRISPLD1Q9H336 500 aa12.94□□□□□ -0.34
CCDC88C-201ENST00000331194 MROH8Q9H579 483 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms