RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PGBD3Q8N328 593 aa18.66■□□□□ 0.58
USP48-201ENST00000308271 GDPD1Q8N9F7 314 aa18.66■□□□□ 0.58
USP48-201ENST00000308271 C1QTNF1Q9BXJ1 281 aa18.66■□□□□ 0.58
USP48-201ENST00000308271 PCBD2Q9H0N5 130 aa18.66■□□□□ 0.58
USP48-201ENST00000308271 NEUROD4Q9HD90 331 aa18.66■□□□□ 0.58
USP48-201ENST00000308271 TRIM36Q9NQ86 728 aa18.66■□□□□ 0.58
USP48-201ENST00000308271 RHCGQ9UBD6 479 aa18.66■□□□□ 0.58
USP48-201ENST00000308271 MAB21L2Q9Y586 359 aa18.66■□□□□ 0.58
USP48-201ENST00000308271 SMIM30A4D0T7 59 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 CPSF4LA6NMK7 179 aaKnown RBP18.65■□□□□ 0.58
USP48-201ENST00000308271 PPP6CO00743 305 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 CAPN5O15484 640 aaPredicted RBP18.65■□□□□ 0.58
USP48-201ENST00000308271 S100A6P06703 90 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 HTR1BP28222 390 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 KCNC3Q14003 757 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 PTGES3Q15185 160 aaKnown RBP18.65■□□□□ 0.58
USP48-201ENST00000308271 LIPJQ5W064 366 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 SLC36A4Q6YBV0 504 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 ZNF598Q86UK7 904 aaKnown RBP18.65■□□□□ 0.58
USP48-201ENST00000308271 RETREG1Q9H6L5 497 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 DPP7Q9UHL4 492 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 SOBPA7XYQ1 873 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 NEDD8-MDP1E9PL57 170 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 SNAPC5O75971 98 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 ALPPP05187 535 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 KLK1P06870 262 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 GABRB3P28472 473 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 RING1Q06587 406 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 NFATC2Q13469 925 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 AKIRIN2Q53H80 203 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 UBE2UQ5VVX9 321 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 HMBOX1Q6NT76 420 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 NCEH1Q6PIU2 408 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 TPRG1Q6ZUI0 275 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 RD3Q7Z3Z2 195 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 RNF130Q86XS8 419 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 REEP4Q9H6H4 257 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 ZBTB20Q9HC78 741 aaPredicted RBP18.65■□□□□ 0.58
USP48-201ENST00000308271 GKN1Q9NS71 199 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 ABCB8Q9NUT2 735 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 CLDN24A6NM45 220 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 OR1F1O43749 312 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 F8A1P23610 371 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 GSTM4Q03013 218 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 ARL9Q6T311 187 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 SHKBP1Q8TBC3 707 aa18.65■□□□□ 0.58
USP48-201ENST00000308271 ALS2Q96Q42 1657 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 OR10H2O60403 315 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 ARHGEF15O94989 841 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 PRAMEF12O95522 483 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 MAGEA11P43364 429 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 CREMQ03060 361 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 NUDT13Q86X67 352 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 VWA5B2Q8N398 1253 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 OR4K1Q8NGD4 311 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 IGSF8Q969P0 613 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 UBXN10Q96LJ8 280 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 ADAMTS5Q9UNA0 930 aa18.64■□□□□ 0.58
USP48-201ENST00000308271 ANXA3P12429 323 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 DPH2Q9BQC3 489 aaPredicted RBP18.64■□□□□ 0.57
USP48-201ENST00000308271 ACOT13Q9NPJ3 140 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 CDH7Q9ULB5 785 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 PCDHGA3Q9Y5H0 932 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 FAM25EA8MYX2 175 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 PQBP1O60828 265 aaKnown RBP18.64■□□□□ 0.57
USP48-201ENST00000308271 NUDT14O95848 222 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 ARCN1P48444 511 aaKnown RBP18.64■□□□□ 0.57
USP48-201ENST00000308271 ZNF81P51508 661 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 EIF2B5Q13144 721 aaKnown RBP18.64■□□□□ 0.57
USP48-201ENST00000308271 ZNF267Q14586 743 aaPredicted RBP18.64■□□□□ 0.57
USP48-201ENST00000308271 GINS1Q14691 196 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 FAM110BQ8TC76 370 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 OR8D1Q8WZ84 308 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 HYLS1Q96M11 299 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 ATOH8Q96SQ7 321 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 MGME1Q9BQP7 344 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 IFT27Q9BW83 186 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 ZNF195O14628 629 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 HSD3B1P14060 373 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 HSD3B2P26439 372 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 DPP6P42658 865 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 TAS2R50P59544 299 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 SERPINA13PQ6UXR4 307 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 FRRS1Q6ZNA5 592 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 CYP4V2Q6ZWL3 525 aaPredicted RBP18.64■□□□□ 0.57
USP48-201ENST00000308271 PNPLA1Q8N8W4 532 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 OR2AP1Q8NGE2 309 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 LILRB4Q8NHJ6 448 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 PROKR1Q8TCW9 393 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 PIGUQ9H490 435 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 EXTL2Q9UBQ6 330 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 UPB1Q9UBR1 384 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 OR10H1Q9Y4A9 318 aa18.64■□□□□ 0.57
USP48-201ENST00000308271 FAM170BA6NMN3 283 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 L7N2F9 121 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 FAAHO00519 579 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 RPS13P62277 151 aaKnown RBP18.63■□□□□ 0.57
USP48-201ENST00000308271 CACUL1Q86Y37 369 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 ARL14EPQ8N8R7 260 aaPredicted RBP18.63■□□□□ 0.57
USP48-201ENST00000308271 RFT1Q96AA3 541 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms