RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 LRRN3Q9H3W5 708 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 LYARQ9NX58 379 aaKnown RBP12.44□□□□□ -0.42
COL3A1-201ENST00000304636 PTGDR2Q9Y5Y4 395 aa12.44□□□□□ -0.42
COL3A1-201ENST00000304636 PLD2O14939 933 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 CLDN7O95471 211 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF280AP59817 542 aaPredicted RBP12.43□□□□□ -0.42
COL3A1-201ENST00000304636 SEMG2Q02383 582 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 PTPRCAPQ14761 206 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 NOXRED1Q6NXP6 359 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 NPAS4Q8IUM7 802 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 KDM1BQ8NB78 822 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 SORT1Q99523 831 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 ABCB8Q9NUT2 735 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 EXTL2Q9UBQ6 330 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 ARFGEF2Q9Y6D5 1785 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 LRRC72A6NJI9 287 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 J3QLW9 94 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF19P17023 458 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 TAS2R50P59544 299 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 JAG1P78504 1218 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 EIF5AL1Q6IS14 154 aaKnown RBP12.43□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF627Q7L945 461 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 Q8N402 240 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 LSM14AQ8ND56 463 aaKnown RBP12.43□□□□□ -0.42
COL3A1-201ENST00000304636 PIP5K1AQ99755 562 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 NUDT15Q9NV35 164 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 WRBO00258 174 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 MRPS14O60783 128 aaKnown RBP12.43□□□□□ -0.42
COL3A1-201ENST00000304636 VIPP01282 170 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 PRH1P02810 166 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 MT-ND5P03915 603 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 ANXA3P12429 323 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 FDXRP22570 491 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF763Q0D2J5 394 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 SLC13A2Q13183 592 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 KRTCAP2Q8N6L1 136 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 TFAP2CQ92754 450 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 SLC29A1Q99808 456 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 CCSER2Q9H7U1 834 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 TMEM181Q9P2C4 612 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 RHCGQ9UBD6 479 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 PPIEQ9UNP9 301 aaKnown RBP12.43□□□□□ -0.42
COL3A1-201ENST00000304636 ERVW-1Q9UQF0 538 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 OARD1Q9Y530 152 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 CDH10Q9Y6N8 788 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.43□□□□□ -0.42
COL3A1-201ENST00000304636 OR1E2P47887 323 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 NCS1P62166 190 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 GARNL3Q5VVW2 1013 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 LIPKQ5VXJ0 399 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 AGTRAPQ6RW13 159 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 GDPD4Q6W3E5 623 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 GNPDA2Q8TDQ7 276 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 NEK7Q8TDX7 302 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 PLEKHA1Q9HB21 404 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 CD93Q9NPY3 652 aa12.43□□□□□ -0.42
COL3A1-201ENST00000304636 MYH7BA7E2Y1 1941 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 TRAV6A0A075B6T7 132 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 TRIM3O75382 744 aaPredicted RBP12.42□□□□□ -0.42
COL3A1-201ENST00000304636 CH25HO95992 272 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF823P16415 610 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 CTNNB1P35222 781 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 OPRL1P41146 370 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 MAP3K8P41279 467 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 CDKN2DP55273 166 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 RPS13P62277 151 aaKnown RBP12.42□□□□□ -0.42
COL3A1-201ENST00000304636 CAP1Q01518 475 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 PON2Q15165 354 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 ATAT1Q5SQI0 421 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 ENPP6Q6UWR7 440 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 PIAS4Q8N2W9 510 aaPredicted RBP12.42□□□□□ -0.42
COL3A1-201ENST00000304636 THAP6Q8TBB0 222 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 ZCCHC10Q8TBK6 192 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 S100A16Q96FQ6 103 aaKnown RBP12.42□□□□□ -0.42
COL3A1-201ENST00000304636 RIOK2Q9BVS4 552 aaKnown RBP12.42□□□□□ -0.42
COL3A1-201ENST00000304636 REEP4Q9H6H4 257 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 RRAGCQ9HB90 399 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 CRTAC1Q9NQ79 661 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 HPF1Q9NWY4 346 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 SMIM30A4D0T7 59 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 KRBA1A5PL33 1030 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 FAAHO00519 579 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 BMXP51813 675 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 CDKL1Q00532 357 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 EXOC3L2Q2M3D2 409 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 LRRC73Q5JTD7 316 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 DCDC5Q6ZRR9 648 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 PSD4Q8NDX1 1056 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 OR2L5Q8NG80 312 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 OR2AP1Q8NGE2 309 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 NLGN3Q9NZ94 848 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 RBPJLQ9UBG7 517 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 SRRDQ9UH36 339 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 HEBP2Q9Y5Z4 205 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 BCAS1O75363 584 aaPredicted RBP12.42□□□□□ -0.42
COL3A1-201ENST00000304636 NFATC1O95644 943 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 STSP08842 583 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 BCKDHAP12694 445 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 SCAPQ12770 1279 aa12.42□□□□□ -0.42
COL3A1-201ENST00000304636 UGT8Q16880 541 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms