RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FBXO6Q9NRD1 293 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 MED16Q9Y2X0 877 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 NEU2Q9Y3R4 380 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 ANKHD1Q8IWZ3 2542 aaKnown RBP13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 PABPN1LA6NDY0 278 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 SAGE2PA6NJ88 616 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 SDR42E2A6NKP2 422 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 SLC16A5O15375 505 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 LCMT2O60294 686 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 PRMT3O60678 531 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 GALR3O60755 368 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 TPOP07202 933 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 CDH1P12830 882 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 ALOX12P18054 663 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 IGFBP2P18065 325 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 CCR8P51685 355 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 RGS1Q08116 209 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 CTBP1Q13363 440 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 RNFT1Q5M7Z0 435 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 ZNF468Q5VIY5 522 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 ZNF549Q6P9A3 640 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 AGTRAPQ6RW13 159 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 ABHD13Q7L211 337 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 PIWIL4Q7Z3Z4 852 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 CD163Q86VB7 1156 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 CPNE9Q8IYJ1 553 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 GPATCH11Q8N954 259 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 ABHD11Q8NFV4 315 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 LILRB4Q8NHJ6 448 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 GABPB2Q8TAK5 448 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 ZNF669Q96BR6 464 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 PTCHD1Q96NR3 888 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 SGPP1Q9BX95 441 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 DEFB126Q9BYW3 111 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 TP63Q9H3D4 680 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 TRMT6Q9UJA5 497 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 GUCA1BQ9UMX6 200 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 PDE10AQ9Y233 779 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 ABCA4P78363 2273 aa13.84□□□□□ -0.19
CCDC88B-201ENST00000301897 ZNF407Q9C0G0 2248 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 HCFC1P51610 2035 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 TCRBV7S3A2A0A539 114 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 URADA6NGE7 173 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 ZNF860A6NHJ4 632 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 NDUFS4O43181 175 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 CHST10O43529 356 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 CEP104O60308 925 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 AVILO75366 819 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 FGGP02679 453 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 HIST1H2AGP0C0S8 130 aaPredicted RBP13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 HIST1H2ADP20671 130 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 PTGER1P34995 402 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 SLC1A2P43004 574 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 MEOX1P50221 254 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 ST13P50502 369 aaKnown RBP13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 ITGA8P53708 1063 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 NAE1Q13564 534 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 ARHGAP11AQ6P4F7 1023 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 PAOXQ6QHF9 649 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 FGD2Q7Z6J4 655 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 DENND6AQ8IWF6 608 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 CYP4X1Q8N118 509 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 KIF2BQ8N4N8 673 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 ZNF740Q8NDX6 193 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 RND1Q92730 232 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 HIST1H2AHQ96KK5 128 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 HIST1H2AJQ99878 128 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 FAM167BQ9BTA0 163 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 H2AFJQ9BTM1 129 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 RBSNQ9H1K0 784 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 KCNJ16Q9NPI9 418 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 TAS2R13Q9NYV9 303 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 KCNN3Q9UGI6 736 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 FBXO5Q9UKT4 447 aa13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 PHF3Q92576 2039 aaKnown RBP13.83□□□□□ -0.2
CCDC88B-201ENST00000301897 AKAP6Q13023 2319 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 ABCA2Q9BZC7 2435 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 A0A1B0GTH9 108 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 TRBC2A0A5B9 178 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 PSMD12O00232 456 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 OR1F1O43749 312 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 PEX1O43933 1283 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 B4GALT2O60909 372 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 RNH1P13489 461 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 NPPBP16860 134 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 TFEBP19484 476 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 KCNJ1P48048 391 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 GPS1Q13098 491 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 TERF2Q15554 542 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 DEFB134Q4QY38 66 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 CES4AQ5XG92 561 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 DUPD1Q68J44 220 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 CEP128Q6ZU80 1094 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 ACAD11Q709F0 780 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 CAND1Q86VP6 1230 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 ZNF227Q86WZ6 799 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 DMRTC2Q8IXT2 367 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 SHISA5Q8N114 240 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 MYO1HQ8N1T3 1032 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms