RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FAM129BQ96TA1 746 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 TAPBPLQ9BX59 468 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 FAM240BA0A1B0GVZ2 78 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 SOX14O95416 240 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ALDH1A1P00352 501 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 PDYNP01213 254 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 HBQ1P09105 142 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 OLR1P78380 273 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 SPIBQ01892 262 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 DSC3Q14574 896 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 PTGES3Q15185 160 aaKnown RBP12.98□□□□□ -0.33
SKA3-201ENST00000298260 LRIF1Q5T3J3 769 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ANGPTL8Q6UXH0 198 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ZNF367Q7RTV3 350 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 LGI4Q8N135 537 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 CFAP52Q8N1V2 620 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 BMPERQ8N8U9 685 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 SLC37A3Q8NCC5 494 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ZBTB44Q8NCP5 570 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ULK4Q96C45 1275 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 TMEM80Q96HE8 168 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 NUP50Q9UKX7 468 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 PCDHGC4Q9Y5F7 938 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 PRAMEF25A6NGN4 478 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 TEX46H3BTG2 121 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 FPGTO14772 594 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ENTPD6O75354 484 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 GPR32O75388 356 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 CSO75390 466 aaKnown RBP12.98□□□□□ -0.33
SKA3-201ENST00000298260 IGLV3-25P01717 112 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 OR4Q2P0C623 313 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 MSL3P1P0C860 447 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 HOXC13P31276 330 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 SDC2P34741 201 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 MAP2K3P46734 347 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 MLLT6P55198 1093 aaPredicted RBP12.98□□□□□ -0.33
SKA3-201ENST00000298260 HSPA14Q0VDF9 509 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 BTN1A1Q13410 526 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 FGFBP1Q14512 234 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ANKRD54Q6NXT1 300 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 C19orf48Q6RUI8 117 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 CBLL1Q75N03 491 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 SCD5Q86SK9 330 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 MIB1Q86YT6 1006 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ZNF680Q8NEM1 530 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 OR11H4Q8NGC9 324 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 LKAAEAR1Q8TD35 194 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 DNAJB3Q8WWF6 145 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 DACT3Q96B18 629 aaPredicted RBP12.98□□□□□ -0.33
SKA3-201ENST00000298260 TOE1Q96GM8 510 aaKnown RBP12.98□□□□□ -0.33
SKA3-201ENST00000298260 APIPQ96GX9 242 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 COPS8Q99627 209 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 ING3Q9NXR8 418 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 RAI2Q9Y5P3 530 aa12.98□□□□□ -0.33
SKA3-201ENST00000298260 OTOFQ9HC10 1997 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 A0A0D9SEW6 157 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 A0A1B0GVC2 190 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 A0A1W2PQH9 124 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 A6NIN4 97 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 TMEM229AB2RXF0 380 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 F8W810 466 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 MANBAO00462 879 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 NCR1O76036 304 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 FCER2P06734 321 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 ARSBP15848 533 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 CPN2P22792 545 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 CHMP24386 653 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 CNR2P34972 360 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 ZNF140P52738 457 aaPredicted RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 ZNF235Q14590 738 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 B3GLCTQ6Y288 498 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 PTCHD4Q6ZW05 846 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 ZNF598Q86UK7 904 aaKnown RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 PDZD3Q86UT5 571 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 COMMD7Q86VX2 200 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 DNAJC5GQ8N7S2 189 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 C1orf74Q96LT6 269 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 DCLRE1CQ96SD1 692 aaKnown RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 TRAF4Q9BUZ4 470 aaPredicted RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 DPCDQ9BVM2 203 aaPredicted RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 BOCQ9BWV1 1114 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 MS4A7Q9GZW8 240 aaPredicted RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 WWOXQ9NZC7 414 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 NDUFAF4Q9P032 175 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 PLEKHB1Q9UF11 243 aaPredicted RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 AFF4Q9UHB7 1163 aaKnown RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 KLHL21Q9UJP4 597 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 E9PQ18 207 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 MYL12BO14950 172 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 AKAP8O43823 692 aaKnown RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 HLA-EP13747 358 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 HOXB9P17482 250 aaPredicted RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 SDC1P18827 310 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 MYL12AP19105 171 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 HLA-DMAP28067 261 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 AGFG1P52594 562 aaKnown RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 PER3P56645 1201 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 CSTF3Q12996 717 aaKnown RBP12.97□□□□□ -0.33
SKA3-201ENST00000298260 UBXN11Q5T124 520 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 CELF5Q8N6W0 485 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms