RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CDK1P06493 297 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 OR1E2P47887 323 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 PXNP49023 591 aaPredicted RBP17.99■□□□□ 0.47
CPSF3-201ENST00000238112 PCDH1Q08174 1060 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 COX20Q5RI15 118 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 HENMT1Q5T8I9 393 aaKnown RBP17.99■□□□□ 0.47
CPSF3-201ENST00000238112 USP43Q70EL4 1123 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 TMCO2Q7Z6W1 182 aaPredicted RBP17.99■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF605Q86T29 641 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 SLC22A16Q86VW1 577 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 KLHDC8AQ8IYD2 350 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 LILRA3Q8N6C8 439 aaPredicted RBP17.99■□□□□ 0.47
CPSF3-201ENST00000238112 KIAA1958Q8N8K9 716 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 OR4K1Q8NGD4 311 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 GGHQ92820 318 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 SLC35A5Q9BS91 424 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 SLC46A2Q9BY10 475 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 REEP4Q9H6H4 257 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 RAD18Q9NS91 495 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF229Q9UJW7 825 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 WASH3PC4AMC7 463 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 M0R082 166 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 NRG2O14511 850 aaPredicted RBP17.99■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF197O14709 1029 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 TGM5O43548 720 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 GADD45AP24522 165 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 SLC19A1P41440 591 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 PRIM2P49643 509 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 TMED10P49755 219 aaKnown RBP17.99■□□□□ 0.47
CPSF3-201ENST00000238112 CTSCP53634 463 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 HBA1P69905 142 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF763Q0D2J5 394 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 SCARB2Q14108 478 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 INAVAQ3KP66 663 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF385BQ569K4 471 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF852Q6ZMS4 543 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 CCDC103Q8IW40 242 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 LGI4Q8N135 537 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 DEPDC4Q8N2C3 294 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 RASGEF1AQ8N9B8 481 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 UTP15Q8TED0 518 aaKnown RBP17.99■□□□□ 0.47
CPSF3-201ENST00000238112 BTN2A2Q8WVV5 523 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 NEIL2Q969S2 332 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 TCF25Q9BQ70 676 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 HEPHQ9BQS7 1158 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 POLE4Q9NR33 117 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 ATP6V1HQ9UI12 483 aa17.99■□□□□ 0.47
CPSF3-201ENST00000238112 LEFTY1O75610 366 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 ITGA2P17301 1181 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 XPAP23025 273 aaPredicted RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 PBLDP30039 288 aaPredicted RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 EIF2DP41214 584 aaKnown RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 MAPK9P45984 424 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 NUDT6P53370 316 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 PNLIPRP1P54315 467 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 MICAQ29983 383 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 NCCRP1Q6ZVX7 275 aaPredicted RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 STX19Q8N4C7 294 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 SLAIN1Q8ND83 568 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF675Q8TD23 568 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 CCM2Q9BSQ5 444 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 C6orf62Q9GZU0 229 aaPredicted RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 ZNF556Q9HAH1 456 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 RLIMQ9NVW2 624 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 AQP9O43315 295 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 C6orf47O95873 294 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 RPLP0P05388 317 aaKnown RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 LAG3P18627 525 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 MVDP53602 400 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 ATN1P54259 1190 aaPredicted RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 RBBP4Q09028 425 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 FCHO2Q0JRZ9 810 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 TSTA3Q13630 321 aaPredicted RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 EXOC3L2Q2M3D2 409 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 AMER2Q8N7J2 671 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 OR52N2Q8NGI0 321 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 OR4C15Q8NGM1 316 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 NFKBIDQ8NI38 313 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 NIPSNAP1Q9BPW8 284 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 ABCB10Q9NRK6 738 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 GPATCH2Q9NW75 528 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 IMPAD1Q9NX62 359 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 EXO1Q9UQ84 846 aaKnown RBP17.98■□□□□ 0.47
CPSF3-201ENST00000238112 CCL26Q9Y258 94 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 PCDHGA2Q9Y5H1 932 aa17.98■□□□□ 0.47
CPSF3-201ENST00000238112 SLC5A10A0PJK1 596 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 METTL15A6NJ78 407 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 TNFRSF21O75509 655 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 CTSAP10619 480 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 DBTP11182 482 aaKnown RBP17.97■□□□□ 0.47
CPSF3-201ENST00000238112 PRLHRP49683 370 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 NOGQ13253 232 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 SLCO4C1Q6ZQN7 724 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 SLC46A3Q7Z3Q1 461 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 DSG4Q86SJ6 1040 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 SYTL1Q8IYJ3 562 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 GOT1L1Q8NHS2 421 aaPredicted RBP17.97■□□□□ 0.47
CPSF3-201ENST00000238112 MYLIPQ8WY64 445 aa17.97■□□□□ 0.47
CPSF3-201ENST00000238112 GLYATL1Q969I3 302 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms