RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 RASSF7Q02833 373 aa11.77□□□□□ -0.53
LINC00339-212ENST00000642072 TRIM26Q12899 539 aaPredicted RBP11.77□□□□□ -0.53
LINC00339-212ENST00000642072 NFIXQ14938 502 aa11.77□□□□□ -0.53
LINC00339-212ENST00000642072 AKAP4Q5JQC9 854 aa11.77□□□□□ -0.53
LINC00339-212ENST00000642072 COL13A1Q5TAT6 717 aaPredicted RBP11.77□□□□□ -0.53
LINC00339-212ENST00000642072 MORC1Q86VD1 984 aa11.77□□□□□ -0.53
LINC00339-212ENST00000642072 C16orf71Q8IYS4 520 aaPredicted RBP11.77□□□□□ -0.53
LINC00339-212ENST00000642072 LGR6Q9HBX8 967 aa11.77□□□□□ -0.53
LINC00339-212ENST00000642072 NARFQ9UHQ1 456 aa11.77□□□□□ -0.53
LINC00339-212ENST00000642072 CLSPNQ9HAW4 1339 aa11.77□□□□□ -0.53
LINC00339-212ENST00000642072 COL15A1P39059 1388 aa11.77□□□□□ -0.53
LINC00339-212ENST00000642072 AFDNP55196 1824 aaKnown RBP11.76□□□□□ -0.53
LINC00339-212ENST00000642072 HSPA5P11021 654 aaKnown RBP11.76□□□□□ -0.53
LINC00339-212ENST00000642072 CARMIL3Q8ND23 1372 aa11.76□□□□□ -0.53
LINC00339-212ENST00000642072 UBR2Q8IWV8 1755 aa11.75□□□□□ -0.53
LINC00339-212ENST00000642072 ZPR1O75312 459 aa11.75□□□□□ -0.53
LINC00339-212ENST00000642072 EIF4G2P78344 907 aaKnown RBP eCLIP11.75□□□□□ -0.53
LINC00339-212ENST00000642072 SLC39A6Q13433 755 aa11.75□□□□□ -0.53
LINC00339-212ENST00000642072 AMER1Q5JTC6 1135 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-212ENST00000642072 SMC1BQ8NDV3 1235 aa11.75□□□□□ -0.53
LINC00339-212ENST00000642072 ZBTB1Q9Y2K1 713 aa11.75□□□□□ -0.53
LINC00339-212ENST00000642072 GLTPD2A6NH11 291 aa11.74□□□□□ -0.53
LINC00339-212ENST00000642072 NFKBIEO00221 500 aa11.74□□□□□ -0.53
LINC00339-212ENST00000642072 RNMTO43148 476 aaKnown RBP11.74□□□□□ -0.53
LINC00339-212ENST00000642072 LMNB1P20700 586 aa11.74□□□□□ -0.53
LINC00339-212ENST00000642072 POTECB2RU33 542 aa11.73□□□□□ -0.53
LINC00339-212ENST00000642072 SERPINB2P05120 415 aa11.73□□□□□ -0.53
LINC00339-212ENST00000642072 TIAM2Q8IVF5 1701 aa11.73□□□□□ -0.53
LINC00339-212ENST00000642072 VSIG10Q8N0Z9 540 aa11.73□□□□□ -0.53
LINC00339-212ENST00000642072 EIF5P55010 431 aaKnown RBP11.72□□□□□ -0.53
LINC00339-212ENST00000642072 MTHFSDQ2M296 383 aaKnown RBP11.72□□□□□ -0.53
LINC00339-212ENST00000642072 TTLL6Q8N841 843 aa11.72□□□□□ -0.53
LINC00339-212ENST00000642072 VEGFAP15692 232 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-212ENST00000642072 KNSTRNQ9Y448 316 aa11.71□□□□□ -0.53
LINC00339-212ENST00000642072 ANKRD31Q8N7Z5 1873 aa11.71□□□□□ -0.53
LINC00339-212ENST00000642072 SCN7AQ01118 1682 aa11.71□□□□□ -0.54
LINC00339-212ENST00000642072 VIRMAQ69YN4 1812 aaKnown RBP11.7□□□□□ -0.54
LINC00339-212ENST00000642072 COL11A2P13942 1736 aaPredicted RBP11.7□□□□□ -0.54
LINC00339-212ENST00000642072 HMOX1P09601 288 aa11.7□□□□□ -0.54
LINC00339-212ENST00000642072 C2CD5Q86YS7 1000 aa11.7□□□□□ -0.54
LINC00339-212ENST00000642072 COL3A1P02461 1466 aaPredicted RBP11.7□□□□□ -0.54
LINC00339-212ENST00000642072 H0YIN7 160 aa11.68□□□□□ -0.54
LINC00339-212ENST00000642072 CANXP27824 592 aaKnown RBP11.68□□□□□ -0.54
LINC00339-212ENST00000642072 TBC1D9BQ66K14 1250 aa11.68□□□□□ -0.54
LINC00339-212ENST00000642072 PRR5LQ6MZQ0 368 aa11.68□□□□□ -0.54
LINC00339-212ENST00000642072 ZNF496Q96IT1 587 aaPredicted RBP11.68□□□□□ -0.54
LINC00339-212ENST00000642072 BRIP1Q9BX63 1249 aa11.68□□□□□ -0.54
LINC00339-212ENST00000642072 FER1L6Q2WGJ9 1857 aa11.68□□□□□ -0.54
LINC00339-212ENST00000642072 SIPA1L3O60292 1781 aaPredicted RBP11.67□□□□□ -0.54
LINC00339-212ENST00000642072 LTBP3Q9NS15 1303 aa11.67□□□□□ -0.54
LINC00339-212ENST00000642072 PER1O15534 1290 aaPredicted RBP11.67□□□□□ -0.54
LINC00339-212ENST00000642072 STARD3NLO95772 234 aa11.67□□□□□ -0.54
LINC00339-212ENST00000642072 HSPA1AP0DMV8 641 aaKnown RBP11.67□□□□□ -0.54
LINC00339-212ENST00000642072 HSPA1BP0DMV9 641 aaKnown RBP11.67□□□□□ -0.54
LINC00339-212ENST00000642072 TNS4Q8IZW8 715 aa11.67□□□□□ -0.54
LINC00339-212ENST00000642072 HEG1Q9ULI3 1381 aa11.67□□□□□ -0.54
LINC00339-212ENST00000642072 KIF7Q2M1P5 1343 aa11.66□□□□□ -0.54
LINC00339-212ENST00000642072 CCDC88AQ3V6T2 1871 aa11.66□□□□□ -0.54
LINC00339-212ENST00000642072 A0A087WZG4 1122 aa11.66□□□□□ -0.54
LINC00339-212ENST00000642072 ZNF790Q6PG37 636 aa11.66□□□□□ -0.54
LINC00339-212ENST00000642072 BICDL1Q6ZP65 573 aa11.66□□□□□ -0.54
LINC00339-212ENST00000642072 IL17REQ8NFR9 667 aa11.66□□□□□ -0.54
LINC00339-212ENST00000642072 PDZRN3Q9UPQ7 1066 aa11.66□□□□□ -0.54
LINC00339-212ENST00000642072 DICER1Q9UPY3 1922 aaKnown RBP11.66□□□□□ -0.54
LINC00339-212ENST00000642072 CEMIPQ8WUJ3 1361 aa11.66□□□□□ -0.54
LINC00339-212ENST00000642072 C21orf2O43822 256 aa11.65□□□□□ -0.54
LINC00339-212ENST00000642072 DIAPH1O60610 1272 aaKnown RBP11.65□□□□□ -0.54
LINC00339-212ENST00000642072 PDE6BP35913 854 aa11.65□□□□□ -0.54
LINC00339-212ENST00000642072 IL6STP40189 918 aaPredicted RBP11.65□□□□□ -0.54
LINC00339-212ENST00000642072 CAPN15O75808 1086 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 CAMTA2O94983 1202 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 POTEIP0CG38 1075 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 POTEJP0CG39 1038 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 ERFEQ4G0M1 354 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 TTC5Q8N0Z6 440 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 CCDC24Q8N4L8 307 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 PCGF6Q9BYE7 350 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 TBC1D2BQ9UPU7 963 aa11.64□□□□□ -0.55
LINC00339-212ENST00000642072 SLX4Q8IY92 1834 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 SRGNP10124 158 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 CHADLQ6NUI6 762 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 DPY19L2Q6NUT2 758 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 C7orf43Q8WVR3 580 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 ZNF622Q969S3 477 aaKnown RBP eCLIP11.63□□□□□ -0.55
LINC00339-212ENST00000642072 TEX13AQ9BXU3 409 aaPredicted RBP11.63□□□□□ -0.55
LINC00339-212ENST00000642072 TAOK3Q9H2K8 898 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 CREBZFQ9NS37 354 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 BCORQ6W2J9 1755 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 ARFGEF2Q9Y6D5 1785 aa11.63□□□□□ -0.55
LINC00339-212ENST00000642072 GNAT3A8MTJ3 354 aa11.62□□□□□ -0.55
LINC00339-212ENST00000642072 DDNO94850 711 aaPredicted RBP11.62□□□□□ -0.55
LINC00339-212ENST00000642072 A1BGP04217 495 aa11.62□□□□□ -0.55
LINC00339-212ENST00000642072 STYK1Q6J9G0 422 aa11.62□□□□□ -0.55
LINC00339-212ENST00000642072 PRPF40BQ6NWY9 871 aaKnown RBP11.62□□□□□ -0.55
LINC00339-212ENST00000642072 ZNF219Q9P2Y4 722 aaPredicted RBP11.62□□□□□ -0.55
LINC00339-212ENST00000642072 NPC1L1Q9UHC9 1359 aa11.62□□□□□ -0.55
LINC00339-212ENST00000642072 PASKQ96RG2 1323 aa11.61□□□□□ -0.55
LINC00339-212ENST00000642072 KCNQ3O43525 872 aa11.61□□□□□ -0.55
LINC00339-212ENST00000642072 TEFQ10587 303 aa11.61□□□□□ -0.55
LINC00339-212ENST00000642072 CNBD1Q8NA66 436 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms