RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 NBPF7P0C2Y1 421 aaPredicted RBP16.78■□□□□ 0.28
PHGDH-233ENST00000642021 EIF2S2P20042 333 aaKnown RBP16.78■□□□□ 0.28
PHGDH-233ENST00000642021 MSNP26038 577 aaKnown RBP16.78■□□□□ 0.28
PHGDH-233ENST00000642021 KIAA1211Q6ZU35 1233 aa16.78■□□□□ 0.28
PHGDH-233ENST00000642021 TBX22Q9Y458 520 aa16.78■□□□□ 0.28
PHGDH-233ENST00000642021 NWD1Q149M9 1564 aa16.78■□□□□ 0.28
PHGDH-233ENST00000642021 PIK3C2AO00443 1686 aa16.78■□□□□ 0.28
PHGDH-233ENST00000642021 HSPA4P34932 840 aa16.78■□□□□ 0.28
PHGDH-233ENST00000642021 PI4K2BQ8TCG2 481 aa16.78■□□□□ 0.28
PHGDH-233ENST00000642021 RGPD8O14715 1765 aaPredicted RBP16.78■□□□□ 0.28
PHGDH-233ENST00000642021 GADD45BO75293 160 aaPredicted RBP16.77■□□□□ 0.28
PHGDH-233ENST00000642021 RHPN1Q8TCX5 695 aa16.77■□□□□ 0.28
PHGDH-233ENST00000642021 NOL7Q9UMY1 257 aaKnown RBP16.77■□□□□ 0.28
PHGDH-233ENST00000642021 OFD1O75665 1012 aa16.77■□□□□ 0.28
PHGDH-233ENST00000642021 POLA2Q14181 598 aa16.77■□□□□ 0.28
PHGDH-233ENST00000642021 ABTB2Q8N961 1025 aa16.77■□□□□ 0.28
PHGDH-233ENST00000642021 FAM208AQ9UK61 1670 aaKnown RBP16.77■□□□□ 0.27
PHGDH-233ENST00000642021 MBD3O95983 291 aa16.77■□□□□ 0.27
PHGDH-233ENST00000642021 LARP6Q9BRS8 491 aaKnown RBP16.77■□□□□ 0.27
PHGDH-233ENST00000642021 LGR6Q9HBX8 967 aa16.77■□□□□ 0.27
PHGDH-233ENST00000642021 LRRC37A3O60309 1634 aa16.76■□□□□ 0.27
PHGDH-233ENST00000642021 SRGAP3O43295 1099 aa16.76■□□□□ 0.27
PHGDH-233ENST00000642021 HS1BP3Q53T59 392 aa16.76■□□□□ 0.27
PHGDH-233ENST00000642021 KCNQ3O43525 872 aa16.76■□□□□ 0.27
PHGDH-233ENST00000642021 HSP90AA2PQ14568 343 aaPredicted RBP16.76■□□□□ 0.27
PHGDH-233ENST00000642021 KLHL34Q8N239 644 aa16.76■□□□□ 0.27
PHGDH-233ENST00000642021 DIP2AQ14689 1571 aa16.75■□□□□ 0.27
PHGDH-233ENST00000642021 AOX1Q06278 1338 aa16.75■□□□□ 0.27
PHGDH-233ENST00000642021 ANXA1P04083 346 aa16.75■□□□□ 0.27
PHGDH-233ENST00000642021 RASEFQ8IZ41 740 aa16.75■□□□□ 0.27
PHGDH-233ENST00000642021 SGSM2O43147 1006 aa16.74■□□□□ 0.27
PHGDH-233ENST00000642021 USP48Q86UV5 1035 aa16.74■□□□□ 0.27
PHGDH-233ENST00000642021 BABAM1Q9NWV8 329 aa16.74■□□□□ 0.27
PHGDH-233ENST00000642021 PI4KAP2A4QPH2 592 aa16.74■□□□□ 0.27
PHGDH-233ENST00000642021 RAB11FIP3O75154 756 aa16.74■□□□□ 0.27
PHGDH-233ENST00000642021 PI4KAP1Q8N8J0 262 aa16.74■□□□□ 0.27
PHGDH-233ENST00000642021 CHPF2Q9P2E5 772 aa16.74■□□□□ 0.27
PHGDH-233ENST00000642021 SNX14Q9Y5W7 946 aa16.74■□□□□ 0.27
PHGDH-233ENST00000642021 KCNA6P17658 529 aa16.73■□□□□ 0.27
PHGDH-233ENST00000642021 EIF4A1P60842 406 aaKnown RBP16.73■□□□□ 0.27
PHGDH-233ENST00000642021 XPCQ01831 940 aaPredicted RBP16.73■□□□□ 0.27
PHGDH-233ENST00000642021 DTNBO60941 627 aa16.73■□□□□ 0.27
PHGDH-233ENST00000642021 BEND3Q5T5X7 828 aa16.73■□□□□ 0.27
PHGDH-233ENST00000642021 C14orf37Q86TY3 774 aa16.73■□□□□ 0.27
PHGDH-233ENST00000642021 LSG1Q9H089 658 aaKnown RBP16.73■□□□□ 0.27
PHGDH-233ENST00000642021 RAD50Q92878 1312 aa16.73■□□□□ 0.27
PHGDH-233ENST00000642021 PXDNLA1KZ92 1463 aa16.72■□□□□ 0.27
PHGDH-233ENST00000642021 NBPF6Q5VWK0 638 aa16.72■□□□□ 0.27
PHGDH-233ENST00000642021 NBPF4Q96M43 638 aa16.72■□□□□ 0.27
PHGDH-233ENST00000642021 RRP9O43818 475 aaKnown RBP16.72■□□□□ 0.27
PHGDH-233ENST00000642021 CPA1P15085 419 aa16.72■□□□□ 0.27
PHGDH-233ENST00000642021 KIF1BPQ96EK5 621 aa16.72■□□□□ 0.27
PHGDH-233ENST00000642021 TTC14Q96N46 770 aa16.72■□□□□ 0.27
PHGDH-233ENST00000642021 SPG7Q9UQ90 795 aa16.72■□□□□ 0.27
PHGDH-233ENST00000642021 ZNF500O60304 480 aaPredicted RBP16.72■□□□□ 0.27
PHGDH-233ENST00000642021 TPM2P07951 284 aa16.72■□□□□ 0.27
PHGDH-233ENST00000642021 CWC27Q6UX04 472 aaKnown RBP16.72■□□□□ 0.27
PHGDH-233ENST00000642021 RPAP1Q9BWH6 1393 aaPredicted RBP16.71■□□□□ 0.27
PHGDH-233ENST00000642021 ZKSCAN5Q9Y2L8 839 aa16.71■□□□□ 0.27
PHGDH-233ENST00000642021 CEMIPQ8WUJ3 1361 aa16.71■□□□□ 0.27
PHGDH-233ENST00000642021 AK2P54819 239 aa16.71■□□□□ 0.26
PHGDH-233ENST00000642021 DNAAF4Q8WXU2 420 aa16.71■□□□□ 0.26
PHGDH-233ENST00000642021 WDR33Q9C0J8 1336 aaKnown RBP16.7■□□□□ 0.26
PHGDH-233ENST00000642021 EPB41L2O43491 1005 aaKnown RBP16.7■□□□□ 0.26
PHGDH-233ENST00000642021 TPRNQ4KMQ1 711 aa16.7■□□□□ 0.26
PHGDH-233ENST00000642021 RUFY3Q7L099 469 aa16.7■□□□□ 0.26
PHGDH-233ENST00000642021 TSPY26PQ9H489 355 aa16.7■□□□□ 0.26
PHGDH-233ENST00000642021 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.69■□□□□ 0.26
PHGDH-233ENST00000642021 R3HCC1Q9Y3T6 440 aaKnown RBP16.69■□□□□ 0.26
PHGDH-233ENST00000642021 CNTROBQ8N137 903 aa16.69■□□□□ 0.26
PHGDH-233ENST00000642021 CNPY2Q9Y2B0 182 aa16.69■□□□□ 0.26
PHGDH-233ENST00000642021 ARHGAP23Q9P227 1491 aa16.68■□□□□ 0.26
PHGDH-233ENST00000642021 RBM33Q96EV2 1170 aaKnown RBP16.68■□□□□ 0.26
PHGDH-233ENST00000642021 LARGE1O95461 756 aa16.68■□□□□ 0.26
PHGDH-233ENST00000642021 MARF1Q9Y4F3 1742 aaKnown RBP16.68■□□□□ 0.26
PHGDH-233ENST00000642021 SLIT1O75093 1534 aa16.67■□□□□ 0.26
PHGDH-233ENST00000642021 ADCY9O60503 1353 aa16.67■□□□□ 0.26
PHGDH-233ENST00000642021 CACNA1FO60840 1977 aa16.67■□□□□ 0.26
PHGDH-233ENST00000642021 SYT1P21579 422 aa16.67■□□□□ 0.26
PHGDH-233ENST00000642021 PTH1RQ03431 593 aa16.67■□□□□ 0.26
PHGDH-233ENST00000642021 IP6K1Q92551 441 aa16.67■□□□□ 0.26
PHGDH-233ENST00000642021 KIF13AQ9H1H9 1805 aa16.67■□□□□ 0.26
PHGDH-233ENST00000642021 ZBTB7CA1YPR0 619 aa16.66■□□□□ 0.26
PHGDH-233ENST00000642021 MPRIPQ6WCQ1 1025 aa16.66■□□□□ 0.26
PHGDH-233ENST00000642021 LRRC59Q96AG4 307 aaKnown RBP16.66■□□□□ 0.26
PHGDH-233ENST00000642021 LIMCH1Q9UPQ0 1083 aa16.66■□□□□ 0.26
PHGDH-233ENST00000642021 ZSCAN22P10073 491 aaPredicted RBP16.66■□□□□ 0.26
PHGDH-233ENST00000642021 ADCK5Q3MIX3 580 aa16.66■□□□□ 0.26
PHGDH-233ENST00000642021 MPNDQ8N594 471 aa16.66■□□□□ 0.26
PHGDH-233ENST00000642021 SYAP1Q96A49 352 aaPredicted RBP16.66■□□□□ 0.26
PHGDH-233ENST00000642021 PA2G4Q9UQ80 394 aaKnown RBP16.66■□□□□ 0.26
PHGDH-233ENST00000642021 CASTP20810 708 aaKnown RBP16.66■□□□□ 0.26
PHGDH-233ENST00000642021 THEMISQ8N1K5 641 aaPredicted RBP16.66■□□□□ 0.26
PHGDH-233ENST00000642021 CCDC39Q9UFE4 941 aa16.66■□□□□ 0.26
PHGDH-233ENST00000642021 ANKARQ7Z5J8 1434 aa16.65■□□□□ 0.26
PHGDH-233ENST00000642021 BTBD11A6QL63 1104 aa16.65■□□□□ 0.26
PHGDH-233ENST00000642021 STX6O43752 255 aa16.65■□□□□ 0.26
PHGDH-233ENST00000642021 OS9Q13438 667 aaPredicted RBP16.65■□□□□ 0.26
PHGDH-233ENST00000642021 PROSER3Q2NL68 480 aa16.65■□□□□ 0.26
PHGDH-233ENST00000642021 DDX54Q8TDD1 881 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms