RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	ATG3	Q9NT62	314 aa		13.26	□□□□□ -0.29
NECAP1-223	ENST00000640091	ZBTB40	Q9NUA8	1239 aa		13.26	□□□□□ -0.29
NECAP1-223	ENST00000640091	KAT6B	Q8WYB5	2073 aa		13.26	□□□□□ -0.29
NECAP1-223	ENST00000640091	FAM182B	Q5T319	152 aa		13.25	□□□□□ -0.29
NECAP1-223	ENST00000640091	QTRT2	Q9H974	415 aa	Known RBP	13.25	□□□□□ -0.29
NECAP1-223	ENST00000640091	AIMP1	Q12904	312 aa	Known RBP	13.25	□□□□□ -0.29
NECAP1-223	ENST00000640091	INTS3	Q68E01	1043 aa	Known RBP	13.25	□□□□□ -0.29
NECAP1-223	ENST00000640091	RBM42	Q9BTD8	480 aa	Known RBP	13.25	□□□□□ -0.29
NECAP1-223	ENST00000640091	TOGARAM1	Q9Y4F4	1720 aa		13.24	□□□□□ -0.29
NECAP1-223	ENST00000640091	C1orf115	Q9H7X2	142 aa		13.24	□□□□□ -0.29
NECAP1-223	ENST00000640091	TRPC5	Q9UL62	973 aa	Predicted RBP	13.24	□□□□□ -0.29
NECAP1-223	ENST00000640091	PI4KAP2	A4QPH2	592 aa		13.24	□□□□□ -0.29
NECAP1-223	ENST00000640091	KCNQ2	O43526	872 aa		13.24	□□□□□ -0.29
NECAP1-223	ENST00000640091	PI4KAP1	Q8N8J0	262 aa		13.24	□□□□□ -0.29
NECAP1-223	ENST00000640091	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
NECAP1-223	ENST00000640091	BCL9	O00512	1426 aa		13.23	□□□□□ -0.29
NECAP1-223	ENST00000640091	AAMP	Q13685	434 aa		13.23	□□□□□ -0.29
NECAP1-223	ENST00000640091	SKAP1	Q86WV1	359 aa		13.23	□□□□□ -0.29
NECAP1-223	ENST00000640091	HYPK	Q9NX55	129 aa		13.23	□□□□□ -0.29
NECAP1-223	ENST00000640091	WNK3	Q9BYP7	1800 aa		13.23	□□□□□ -0.29
NECAP1-223	ENST00000640091	A1BG	P04217	495 aa		13.22	□□□□□ -0.29
NECAP1-223	ENST00000640091	KDM2B	Q8NHM5	1336 aa		13.22	□□□□□ -0.29
NECAP1-223	ENST00000640091	COPS6	Q7L5N1	327 aa		13.21	□□□□□ -0.29
NECAP1-223	ENST00000640091	NBPF26	B4DH59	902 aa		13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	CCT4	P50991	539 aa	Known RBP	13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	NBPF14	Q5TI25	921 aa		13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	NBPF10	Q6P3W6	841 aa	Known RBP	13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	DNAJC10	Q8IXB1	793 aa		13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	SEPT12	Q8IYM1	358 aa		13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	NBPF15	Q8N660	670 aa		13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	SLC4A9	Q96Q91	983 aa		13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	MEIS3	Q99687	375 aa		13.21	□□□□□ -0.3
NECAP1-223	ENST00000640091	KCP	Q6ZWJ8	1503 aa		13.2	□□□□□ -0.3
NECAP1-223	ENST00000640091	PTF1A	Q7RTS3	328 aa		13.2	□□□□□ -0.3
NECAP1-223	ENST00000640091	XAGE3	Q8WTP9	111 aa		13.2	□□□□□ -0.3
NECAP1-223	ENST00000640091	DNAAF4	Q8WXU2	420 aa		13.2	□□□□□ -0.3
NECAP1-223	ENST00000640091	MAP3K2	Q9Y2U5	619 aa		13.2	□□□□□ -0.3
NECAP1-223	ENST00000640091	C5	P01031	1676 aa		13.2	□□□□□ -0.3
NECAP1-223	ENST00000640091	ATRN	O75882	1429 aa		13.2	□□□□□ -0.3
NECAP1-223	ENST00000640091	ONECUT3	O60422	494 aa	Predicted RBP	13.19	□□□□□ -0.3
NECAP1-223	ENST00000640091	LRP10	Q7Z4F1	713 aa		13.19	□□□□□ -0.3
NECAP1-223	ENST00000640091	CHMP4B	Q9H444	224 aa	Known RBP	13.19	□□□□□ -0.3
NECAP1-223	ENST00000640091	GLI3	P10071	1580 aa		13.19	□□□□□ -0.3
NECAP1-223	ENST00000640091	ADCY9	O60503	1353 aa		13.19	□□□□□ -0.3
NECAP1-223	ENST00000640091	KSR2	Q6VAB6	950 aa		13.19	□□□□□ -0.3
NECAP1-223	ENST00000640091	RWDD1	Q9H446	243 aa	Predicted RBP	13.19	□□□□□ -0.3
NECAP1-223	ENST00000640091	ITGB4	P16144	1822 aa		13.19	□□□□□ -0.3
NECAP1-223	ENST00000640091	BEND3	Q5T5X7	828 aa		13.18	□□□□□ -0.3
NECAP1-223	ENST00000640091	RIC3	Q7Z5B4	369 aa		13.18	□□□□□ -0.3
NECAP1-223	ENST00000640091	VSIG10	Q8N0Z9	540 aa		13.18	□□□□□ -0.3
NECAP1-223	ENST00000640091	SRCIN1	Q9C0H9	1055 aa		13.18	□□□□□ -0.3
NECAP1-223	ENST00000640091	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.18	□□□□□ -0.3
NECAP1-223	ENST00000640091	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.18	□□□□□ -0.3
NECAP1-223	ENST00000640091	DDX58	O95786	925 aa	Known RBP	13.17	□□□□□ -0.3
NECAP1-223	ENST00000640091	ANKRD13D	Q6ZTN6	518 aa		13.17	□□□□□ -0.3
NECAP1-223	ENST00000640091	DOT1L	Q8TEK3	1739 aa		13.17	□□□□□ -0.3
NECAP1-223	ENST00000640091	SIRT2	Q8IXJ6	389 aa		13.16	□□□□□ -0.3
NECAP1-223	ENST00000640091	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.16	□□□□□ -0.3
NECAP1-223	ENST00000640091	USP44	Q9H0E7	712 aa		13.16	□□□□□ -0.3
NECAP1-223	ENST00000640091	UBR2	Q8IWV8	1755 aa		13.16	□□□□□ -0.3
NECAP1-223	ENST00000640091	CACNA1F	O60840	1977 aa		13.16	□□□□□ -0.3
NECAP1-223	ENST00000640091	STARD3NL	O95772	234 aa		13.16	□□□□□ -0.3
NECAP1-223	ENST00000640091	PAPPA	Q13219	1627 aa		13.16	□□□□□ -0.3
NECAP1-223	ENST00000640091	CWF19L2	Q2TBE0	894 aa	Known RBP	13.16	□□□□□ -0.3
NECAP1-223	ENST00000640091	ATP6V1A	P38606	617 aa		13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	HDAC1	Q13547	482 aa	Predicted RBP	13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	TTLL7	Q6ZT98	887 aa		13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	LOC102724428	A0A0B4J2F2	783 aa		13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	CYP19A1	P11511	503 aa	Predicted RBP	13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	KCNQ4	P56696	695 aa		13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	SIK1	P57059	783 aa		13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	FBXO41	Q8TF61	875 aa		13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	ARX	Q96QS3	562 aa		13.15	□□□□□ -0.3
NECAP1-223	ENST00000640091	EP400	Q96L91	3159 aa		13.14	□□□□□ -0.31
NECAP1-223	ENST00000640091	ZNF772	Q68DY9	489 aa	Predicted RBP	13.14	□□□□□ -0.31
NECAP1-223	ENST00000640091	THSD7A	Q9UPZ6	1657 aa		13.14	□□□□□ -0.31
NECAP1-223	ENST00000640091	ERBB4	Q15303	1308 aa		13.13	□□□□□ -0.31
NECAP1-223	ENST00000640091	MYD88	Q99836	296 aa		13.13	□□□□□ -0.31
NECAP1-223	ENST00000640091	PALLD	Q8WX93	1383 aa		13.13	□□□□□ -0.31
NECAP1-223	ENST00000640091	GNAI2	P04899	355 aa		13.13	□□□□□ -0.31
NECAP1-223	ENST00000640091	IGKV5-2	P06315	115 aa		13.13	□□□□□ -0.31
NECAP1-223	ENST00000640091	GNAI3	P08754	354 aa		13.13	□□□□□ -0.31
NECAP1-223	ENST00000640091	ZBTB3	Q9H5J0	574 aa		13.13	□□□□□ -0.31
NECAP1-223	ENST00000640091	ATP5J2-PTCD1	G3V325	749 aa		13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	UBTFL1	P0CB47	393 aa	Predicted RBP	13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	RGS3	P49796	1198 aa		13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	ITPK1	Q13572	414 aa		13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	CEP85	Q6P2H3	762 aa		13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	LINS1	Q8NG48	757 aa		13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	PLBD2	Q8NHP8	589 aa		13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	METTL22	Q9BUU2	404 aa	Predicted RBP	13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	ZBTB1	Q9Y2K1	713 aa		13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	LRRFIP2	Q9Y608	721 aa	Known RBP	13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	RBM6	P78332	1123 aa	Known RBP	13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	NEXN	Q0ZGT2	675 aa		13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	SMARCC1	Q92922	1105 aa	Predicted RBP	13.12	□□□□□ -0.31
NECAP1-223	ENST00000640091	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.12	□□□□□ -0.31

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