RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ADAMTS7Q9UKP4 1686 aa20.42■□□□□ 0.86
SYNE2-228ENST00000639659 COL15A1P39059 1388 aa20.41■□□□□ 0.86
SYNE2-228ENST00000639659 AFDNP55196 1824 aaKnown RBP20.41■□□□□ 0.86
SYNE2-228ENST00000639659 RNMTO43148 476 aaKnown RBP20.4■□□□□ 0.86
SYNE2-228ENST00000639659 SBF1O95248 1867 aa20.4■□□□□ 0.86
SYNE2-228ENST00000639659 TM4SF1P30408 202 aa20.4■□□□□ 0.86
SYNE2-228ENST00000639659 CLSPNQ9HAW4 1339 aa20.4■□□□□ 0.86
SYNE2-228ENST00000639659 ZBTB1Q9Y2K1 713 aa20.4■□□□□ 0.86
SYNE2-228ENST00000639659 CYP19A1P11511 503 aaPredicted RBP20.39■□□□□ 0.85
SYNE2-228ENST00000639659 NFIXQ14938 502 aa20.39■□□□□ 0.85
SYNE2-228ENST00000639659 BICDL1Q6ZP65 573 aa20.39■□□□□ 0.85
SYNE2-228ENST00000639659 CANXP27824 592 aaKnown RBP20.38■□□□□ 0.85
SYNE2-228ENST00000639659 FSTL1Q12841 308 aa20.38■□□□□ 0.85
SYNE2-228ENST00000639659 CNGB1Q14028 1251 aaPredicted RBP20.38■□□□□ 0.85
SYNE2-228ENST00000639659 MRC1P22897 1456 aa20.37■□□□□ 0.85
SYNE2-228ENST00000639659 KLRG1Q96E93 195 aa20.37■□□□□ 0.85
SYNE2-228ENST00000639659 NARFQ9UHQ1 456 aa20.37■□□□□ 0.85
SYNE2-228ENST00000639659 SERPINB2P05120 415 aa20.36■□□□□ 0.85
SYNE2-228ENST00000639659 C2CD5Q86YS7 1000 aa20.36■□□□□ 0.85
SYNE2-228ENST00000639659 ZNF330Q9Y3S2 320 aaPredicted RBP20.36■□□□□ 0.85
SYNE2-228ENST00000639659 MTHFSDQ2M296 383 aaKnown RBP20.35■□□□□ 0.85
SYNE2-228ENST00000639659 SMC1BQ8NDV3 1235 aa20.35■□□□□ 0.85
SYNE2-228ENST00000639659 CARMIL3Q8ND23 1372 aa20.34■□□□□ 0.85
SYNE2-228ENST00000639659 TIAM2Q8IVF5 1701 aa20.34■□□□□ 0.85
SYNE2-228ENST00000639659 LMNB1P20700 586 aa20.34■□□□□ 0.85
SYNE2-228ENST00000639659 TTC5Q8N0Z6 440 aa20.34■□□□□ 0.85
SYNE2-228ENST00000639659 ZNF219Q9P2Y4 722 aaPredicted RBP20.34■□□□□ 0.85
SYNE2-228ENST00000639659 DLEC1Q9Y238 1755 aa20.34■□□□□ 0.85
SYNE2-228ENST00000639659 AMER1Q5JTC6 1135 aaPredicted RBP20.33■□□□□ 0.85
SYNE2-228ENST00000639659 CC2D1BQ5T0F9 858 aaKnown RBP20.33■□□□□ 0.85
SYNE2-228ENST00000639659 TTLL6Q8N841 843 aa20.33■□□□□ 0.85
SYNE2-228ENST00000639659 BCL2L12Q9HB09 334 aa20.33■□□□□ 0.85
SYNE2-228ENST00000639659 NRXN2Q9P2S2 1712 aa20.33■□□□□ 0.84
SYNE2-228ENST00000639659 CAPN15O75808 1086 aa20.32■□□□□ 0.84
SYNE2-228ENST00000639659 CCER1Q8TC90 406 aaPredicted RBP20.32■□□□□ 0.84
SYNE2-228ENST00000639659 CCDC88AQ3V6T2 1871 aa20.32■□□□□ 0.84
SYNE2-228ENST00000639659 H0YIN7 160 aa20.31■□□□□ 0.84
SYNE2-228ENST00000639659 DIAPH1O60610 1272 aaKnown RBP20.31■□□□□ 0.84
SYNE2-228ENST00000639659 CCDC24Q8N4L8 307 aa20.31■□□□□ 0.84
SYNE2-228ENST00000639659 PRELPP51888 382 aa20.3■□□□□ 0.84
SYNE2-228ENST00000639659 COL13A1Q5TAT6 717 aaPredicted RBP20.3■□□□□ 0.84
SYNE2-228ENST00000639659 ZNF622Q969S3 477 aaKnown RBP eCLIP20.3■□□□□ 0.84
SYNE2-228ENST00000639659 UBR2Q8IWV8 1755 aa20.29■□□□□ 0.84
SYNE2-228ENST00000639659 GLTPD2A6NH11 291 aa20.29■□□□□ 0.84
SYNE2-228ENST00000639659 U2SURPO15042 1029 aaKnown RBP20.29■□□□□ 0.84
SYNE2-228ENST00000639659 NPHP1O15259 732 aa20.29■□□□□ 0.84
SYNE2-228ENST00000639659 STARD3NLO95772 234 aa20.29■□□□□ 0.84
SYNE2-228ENST00000639659 KIF7Q2M1P5 1343 aa20.28■□□□□ 0.84
SYNE2-228ENST00000639659 ZC3H4Q9UPT8 1303 aaKnown RBP20.28■□□□□ 0.84
SYNE2-228ENST00000639659 VEGFAP15692 232 aaPredicted RBP20.28■□□□□ 0.84
SYNE2-228ENST00000639659 TEFQ10587 303 aa20.28■□□□□ 0.84
SYNE2-228ENST00000639659 VSIG10Q8N0Z9 540 aa20.28■□□□□ 0.84
SYNE2-228ENST00000639659 A0A087WZG4 1122 aa20.27■□□□□ 0.84
SYNE2-228ENST00000639659 NFKBIEO00221 500 aa20.27■□□□□ 0.84
SYNE2-228ENST00000639659 TBC1D9BQ66K14 1250 aa20.27■□□□□ 0.84
SYNE2-228ENST00000639659 JMYQ8N9B5 988 aa20.27■□□□□ 0.84
SYNE2-228ENST00000639659 TBC1D2BQ9UPU7 963 aa20.27■□□□□ 0.84
SYNE2-228ENST00000639659 NPM2Q86SE8 214 aaKnown RBP20.26■□□□□ 0.83
SYNE2-228ENST00000639659 ANKRD31Q8N7Z5 1873 aa20.26■□□□□ 0.83
SYNE2-228ENST00000639659 SCN7AQ01118 1682 aa20.26■□□□□ 0.83
SYNE2-228ENST00000639659 C21orf2O43822 256 aa20.25■□□□□ 0.83
SYNE2-228ENST00000639659 ZNF496Q96IT1 587 aaPredicted RBP20.25■□□□□ 0.83
SYNE2-228ENST00000639659 COL11A2P13942 1736 aaPredicted RBP20.24■□□□□ 0.83
SYNE2-228ENST00000639659 CACNA1SQ13698 1873 aa20.24■□□□□ 0.83
SYNE2-228ENST00000639659 EIF5P55010 431 aaKnown RBP20.24■□□□□ 0.83
SYNE2-228ENST00000639659 TNS4Q8IZW8 715 aa20.24■□□□□ 0.83
SYNE2-228ENST00000639659 HEG1Q9ULI3 1381 aa20.23■□□□□ 0.83
SYNE2-228ENST00000639659 DPY19L2Q6NUT2 758 aa20.23■□□□□ 0.83
SYNE2-228ENST00000639659 GNAT3A8MTJ3 354 aa20.22■□□□□ 0.83
SYNE2-228ENST00000639659 PDE6BP35913 854 aa20.22■□□□□ 0.83
SYNE2-228ENST00000639659 ERFEQ4G0M1 354 aa20.22■□□□□ 0.83
SYNE2-228ENST00000639659 PRR5LQ6MZQ0 368 aa20.22■□□□□ 0.83
SYNE2-228ENST00000639659 ZNF790Q6PG37 636 aa20.22■□□□□ 0.83
SYNE2-228ENST00000639659 CNBD1Q8NA66 436 aa20.21■□□□□ 0.83
SYNE2-228ENST00000639659 GAS2L2Q8NHY3 880 aa20.21■□□□□ 0.83
SYNE2-228ENST00000639659 A1BGP04217 495 aa20.2■□□□□ 0.82
SYNE2-228ENST00000639659 HSPA1AP0DMV8 641 aaKnown RBP20.2■□□□□ 0.82
SYNE2-228ENST00000639659 HSPA1BP0DMV9 641 aaKnown RBP20.2■□□□□ 0.82
SYNE2-228ENST00000639659 IL17REQ8NFR9 667 aa20.2■□□□□ 0.82
SYNE2-228ENST00000639659 BRIP1Q9BX63 1249 aa20.2■□□□□ 0.82
SYNE2-228ENST00000639659 SIPA1L3O60292 1781 aaPredicted RBP20.19■□□□□ 0.82
SYNE2-228ENST00000639659 PIP4K2AP48426 406 aaPredicted RBP20.19■□□□□ 0.82
SYNE2-228ENST00000639659 ST5P78524 1137 aa20.19■□□□□ 0.82
SYNE2-228ENST00000639659 FMNL2Q96PY5 1086 aa20.19■□□□□ 0.82
SYNE2-228ENST00000639659 SETDB2Q96T68 719 aa20.19■□□□□ 0.82
SYNE2-228ENST00000639659 TEX13AQ9BXU3 409 aaPredicted RBP20.19■□□□□ 0.82
SYNE2-228ENST00000639659 COL3A1P02461 1466 aaPredicted RBP20.18■□□□□ 0.82
SYNE2-228ENST00000639659 IL6STP40189 918 aaPredicted RBP20.18■□□□□ 0.82
SYNE2-228ENST00000639659 TAOK3Q9H2K8 898 aa20.18■□□□□ 0.82
SYNE2-228ENST00000639659 FER1L6Q2WGJ9 1857 aa20.18■□□□□ 0.82
SYNE2-228ENST00000639659 DICER1Q9UPY3 1922 aaKnown RBP20.17■□□□□ 0.82
SYNE2-228ENST00000639659 POTECB2RU33 542 aa20.17■□□□□ 0.82
SYNE2-228ENST00000639659 KCNQ3O43525 872 aa20.17■□□□□ 0.82
SYNE2-228ENST00000639659 PDZRN3Q9UPQ7 1066 aa20.17■□□□□ 0.82
SYNE2-228ENST00000639659 PCNTO95613 3336 aa20.16■□□□□ 0.82
SYNE2-228ENST00000639659 BTBD11A6QL63 1104 aa20.16■□□□□ 0.82
SYNE2-228ENST00000639659 PER1O15534 1290 aaPredicted RBP20.16■□□□□ 0.82
SYNE2-228ENST00000639659 DZIP3Q86Y13 1208 aaKnown RBP20.16■□□□□ 0.82
SYNE2-228ENST00000639659 SLX4Q8IY92 1834 aa20.16■□□□□ 0.82
SYNE2-228ENST00000639659 DDNO94850 711 aaPredicted RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms