RNA–Protein interactions for RNA: ENST00000638473.1

SCN3A-208, Transcript of sodium voltage-gated channel alpha subunit 3, human

TSL 5

Gene SCN3A, Length 8,724 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN3A-208	ENST00000638473	ATP7B	P35670	1465 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	ST5	P78524	1137 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	PPP1R42	Q7Z4L9	355 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	LRP2BP	Q9P2M1	347 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	VPS37C	A5D8V6	355 aa	Predicted RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	MSN	P26038	577 aa	Known RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	IK	Q13123	557 aa	Predicted RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	SART3	Q15020	963 aa	Known RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	BCL11B	Q9C0K0	894 aa	Predicted RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	ZNF219	Q9P2Y4	722 aa	Predicted RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	SLC5A1	P13866	664 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	CHAF1A	Q13111	956 aa	Predicted RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	ANKRD13D	Q6ZTN6	518 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	XAGE3	Q8WTP9	111 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	CCDC8	Q9H0W5	538 aa	Predicted RBP	5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	TMEM94	Q12767	1356 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	ARHGEF40	Q8TER5	1519 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	ARHGAP31	Q2M1Z3	1444 aa		5.24	□□□□□ -1.57
SCN3A-208	ENST00000638473	GOLGA6L3	A6NEY3	463 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	DCAF5	Q96JK2	942 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	DEK	P35659	375 aa	Known RBP	5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	BOLA2	Q9H3K6	86 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	PLEKHG3	A1L390	1219 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	IDH1	O75874	414 aa	Known RBP	5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	MX1	P20591	662 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	ATP2B2	Q01814	1243 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	STK3	Q13188	491 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	COPS6	Q7L5N1	327 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	SMARCC1	Q92922	1105 aa	Predicted RBP	5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	NACAP1	Q9BZK3	213 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	FAM98C	Q17RN3	349 aa	Known RBP	5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	BCORL1	Q5H9F3	1711 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	CCDC69	A6NI79	296 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	IFIT1	P09914	478 aa	Known RBP	5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	TPD52L1	Q16890	204 aa	Predicted RBP	5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	USP21	Q9UK80	565 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	BRMS1	Q9HCU9	246 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	NPC1L1	Q9UHC9	1359 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	TDO2	P48775	406 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	NEK4	P51957	841 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	TSPYL6	Q8N831	410 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	SETDB2	Q96T68	719 aa		5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	DDX49	Q9Y6V7	483 aa	Known RBP	5.23	□□□□□ -1.57
SCN3A-208	ENST00000638473	SAFB	Q15424	915 aa	Known RBP eCLIP	5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	KRT24	Q2M2I5	525 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	DZIP3	Q86Y13	1208 aa	Known RBP	5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	ABCF2	Q9UG63	623 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	LMTK2	Q8IWU2	1503 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	SKAP1	Q86WV1	359 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	UBE3B	Q7Z3V4	1068 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	CHMP5	Q9NZZ3	219 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	CYP46A1	Q9Y6A2	500 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	XBP1	P17861	261 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	DDX46	Q7L014	1031 aa	Known RBP	5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	ZNF622	Q969S3	477 aa	Known RBP eCLIP	5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	MROH2A	A6NES4	1674 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	NBPF6	Q5VWK0	638 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	NBPF5P	Q86XG9	351 aa	Predicted RBP	5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	NBPF4	Q96M43	638 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	LGR6	Q9HBX8	967 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	SETBP1	Q9Y6X0	1596 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	CCDC152	Q4G0S7	254 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	AIDA	Q96BJ3	306 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	IGHD	P01880	384 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	KIAA2012	Q0VF49	1180 aa		5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	SKOR2	Q2VWA4	1001 aa	Predicted RBP	5.22	□□□□□ -1.57
SCN3A-208	ENST00000638473	RTN4	Q9NQC3	1192 aa	Known RBP	5.21	□□□□□ -1.57
SCN3A-208	ENST00000638473	NUCB2	P80303	420 aa		5.21	□□□□□ -1.57
SCN3A-208	ENST00000638473	BICD2	Q8TD16	824 aa		5.21	□□□□□ -1.57
SCN3A-208	ENST00000638473	CDC5L	Q99459	802 aa	Known RBP	5.21	□□□□□ -1.57
SCN3A-208	ENST00000638473	UTP14A	Q9BVJ6	771 aa	Known RBP	5.21	□□□□□ -1.57
SCN3A-208	ENST00000638473	SLC52A2	Q9HAB3	445 aa		5.21	□□□□□ -1.57
SCN3A-208	ENST00000638473	NIP7	Q9Y221	180 aa	Known RBP eCLIP	5.21	□□□□□ -1.57
SCN3A-208	ENST00000638473	USP6	P35125	1406 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	MPHOSPH10	O00566	681 aa	Known RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	USP5	P45974	858 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	RABEP1	Q15276	862 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	KSR2	Q6VAB6	950 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	HOMEZ	Q8IX15	550 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	CDCA7	Q9BWT1	371 aa	Predicted RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	RTCB	Q9Y3I0	505 aa	Known RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	GLRX3	O76003	335 aa	Known RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	DZIP1	Q86YF9	867 aa	Known RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	NUP133	Q8WUM0	1156 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	MEIS3	Q99687	375 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	PDRG1	Q9NUG6	133 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	PES1	O00541	588 aa	Known RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	HMGB1	P09429	215 aa	Known RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	ANKRD1	Q15327	319 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	JAKMIP1	Q96N16	626 aa	Known RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	TRIM35	Q9UPQ4	493 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	BLM	P54132	1417 aa	Predicted RBP	5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	VAMP4	O75379	141 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	LDHAL6A	Q6ZMR3	332 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	ARHGAP45	Q92619	1136 aa		5.21	□□□□□ -1.58
SCN3A-208	ENST00000638473	NYX	Q9GZU5	481 aa		5.21	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms