RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CABP1Q9NZU7 370 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 EIF6P56537 245 aaKnown RBP7.12□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC178Q5BJE1 867 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 EHBP1L1Q8N3D4 1523 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 KIAA1328Q86T90 577 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 RANBP6O60518 1105 aaKnown RBP7.12□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC85AQ96PX6 553 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-217ENST00000637988 HAUS2Q9NVX0 235 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 HYPKQ9NX55 129 aa7.12□□□□□ -1.27
SCN1A-217ENST00000637988 EIF4G3O43432 1585 aaKnown RBP7.12□□□□□ -1.27
SCN1A-217ENST00000637988 HFM1A2PYH4 1435 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 C9orf84Q5VXU9 1444 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 AMPD3Q01432 767 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 NFKBIBQ15653 356 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 RAPGEF3O95398 923 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 SSFA2P28290 1259 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 CEBPZQ03701 1054 aaKnown RBP7.11□□□□□ -1.27
SCN1A-217ENST00000637988 PRPF31Q8WWY3 499 aaKnown RBP7.11□□□□□ -1.27
SCN1A-217ENST00000637988 IPO9Q96P70 1041 aaKnown RBP7.11□□□□□ -1.27
SCN1A-217ENST00000637988 EYA3Q99504 573 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 GOLGA6L10A0A0M3HER8 536 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 CALML4Q96GE6 196 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 GCC1Q96CN9 775 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 SNAPC4Q5SXM2 1469 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 ACTN2P35609 894 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 ATP6V1AP38606 617 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 ERMNQ8TAM6 284 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 FMNL2Q96PY5 1086 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 SRGAP3O43295 1099 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 RRP1P56182 461 aaKnown RBP7.11□□□□□ -1.27
SCN1A-217ENST00000637988 TNPO1Q92973 898 aaKnown RBP7.11□□□□□ -1.27
SCN1A-217ENST00000637988 TAOK3Q9H2K8 898 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 CUL7Q14999 1698 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 KRT28Q7Z3Y7 464 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 LRRC27Q9C0I9 530 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 TTC12Q9H892 705 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-217ENST00000637988 VEZTQ9HBM0 779 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 SPC25Q9HBM1 224 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 TMOD4Q9NZQ9 345 aa7.11□□□□□ -1.27
SCN1A-217ENST00000637988 PUF60Q9UHX1 559 aaKnown RBP7.11□□□□□ -1.27
SCN1A-217ENST00000637988 RTCBQ9Y3I0 505 aaKnown RBP7.11□□□□□ -1.27
SCN1A-217ENST00000637988 C11orf95C9JLR9 678 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-217ENST00000637988 DPY19L2Q6NUT2 758 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 SLC5A4Q9NY91 659 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 PRKAG2Q9UGJ0 569 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 RAB3IL1Q8TBN0 382 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 ALS2CR12Q96Q35 445 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 CENPHQ9H3R5 247 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 EFCAB5A4FU69 1503 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 SPOUT1Q5T280 376 aaKnown RBP7.1□□□□□ -1.27
SCN1A-217ENST00000637988 CRNKL1Q9BZJ0 848 aaKnown RBP7.1□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC61Q9Y6R9 512 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 STX6O43752 255 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 BLOC1S2Q6QNY1 142 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 CACNA2D4Q7Z3S7 1137 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 CTNNBL1Q8WYA6 563 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-217ENST00000637988 IVNS1ABPQ9Y6Y0 642 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC172P0C7W6 258 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC194A0A1B0GVG4 234 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 KAT14Q9H8E8 782 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 SLC12A7Q9Y666 1083 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 GJA3Q9Y6H8 435 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 GSTTP1A0A1W2PQM5 241 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 GAS8O95995 478 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 STK3Q13188 491 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 SPA17Q15506 151 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 DDX12PQ92771 950 aa7.1□□□□□ -1.27
SCN1A-217ENST00000637988 ERLIN1O75477 346 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 NUDT16Q96DE0 195 aaKnown RBP7.09□□□□□ -1.27
SCN1A-217ENST00000637988 ODF2LQ9ULJ1 636 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 EIF3JO75822 258 aaKnown RBP7.09□□□□□ -1.27
SCN1A-217ENST00000637988 PYM1Q9BRP8 204 aaKnown RBP7.09□□□□□ -1.27
SCN1A-217ENST00000637988 IMPG2Q9BZV3 1241 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 RAB11FIP3O75154 756 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 DDB1Q16531 1140 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 ZNF408Q9H9D4 720 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC141Q6ZP82 1450 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 NPHP3Q7Z494 1330 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 TSPYL1Q9H0U9 437 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 SMTNL1A8MU46 457 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 ARL1P40616 181 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-217ENST00000637988 SNX16P57768 344 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 CCDC14Q49A88 953 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 NLRP3Q96P20 1036 aa7.09□□□□□ -1.27
SCN1A-217ENST00000637988 PHACTR2O75167 634 aa7.09□□□□□ -1.28
SCN1A-217ENST00000637988 EP400NLQ6ZTU2 488 aa7.09□□□□□ -1.28
SCN1A-217ENST00000637988 SH2D4AQ9H788 454 aa7.09□□□□□ -1.28
SCN1A-217ENST00000637988 TCP11L1Q9NUJ3 509 aa7.09□□□□□ -1.28
SCN1A-217ENST00000637988 WDR7Q9Y4E6 1490 aa7.09□□□□□ -1.28
SCN1A-217ENST00000637988 KIAA0754O94854 1291 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 HMGB1P09429 215 aaKnown RBP7.08□□□□□ -1.28
SCN1A-217ENST00000637988 TSPOAP1O95153 1857 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 M0QZ92 97 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 SH3BP5O60239 455 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 ZWINTO95229 277 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 PLCG2P16885 1265 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 MVPQ14764 893 aaKnown RBP7.08□□□□□ -1.28
SCN1A-217ENST00000637988 OTUD6BQ8N6M0 293 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 C22orf23Q9BZE7 217 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 ZC3H12CQ9C0D7 883 aaKnown RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms