RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 IFFO2Q5TF58 517 aa24.16■■□□□ 1.46
CIITA-215ENST00000637439 NARFQ9UHQ1 456 aa24.16■■□□□ 1.46
CIITA-215ENST00000637439 COL15A1P39059 1388 aa24.15■■□□□ 1.46
CIITA-215ENST00000637439 CHRNA5P30532 468 aa24.14■■□□□ 1.45
CIITA-215ENST00000637439 CC2D1BQ5T0F9 858 aaKnown RBP24.14■■□□□ 1.45
CIITA-215ENST00000637439 NMRK2Q9NPI5 230 aa24.13■■□□□ 1.45
CIITA-215ENST00000637439 KDM2BQ8NHM5 1336 aa24.12■■□□□ 1.45
CIITA-215ENST00000637439 C16orf71Q8IYS4 520 aaPredicted RBP24.12■■□□□ 1.45
CIITA-215ENST00000637439 TTC5Q8N0Z6 440 aa24.12■■□□□ 1.45
CIITA-215ENST00000637439 ZBTB1Q9Y2K1 713 aa24.12■■□□□ 1.45
CIITA-215ENST00000637439 NFIXQ14938 502 aa24.11■■□□□ 1.45
CIITA-215ENST00000637439 RNF181Q9P0P0 153 aa24.11■■□□□ 1.45
CIITA-215ENST00000637439 NPC1L1Q9UHC9 1359 aa24.11■■□□□ 1.45
CIITA-215ENST00000637439 UBR2Q8IWV8 1755 aa24.11■■□□□ 1.45
CIITA-215ENST00000637439 STARD3NLO95772 234 aa24.1■■□□□ 1.45
CIITA-215ENST00000637439 RBM46Q8TBY0 533 aaKnown RBP24.1■■□□□ 1.45
CIITA-215ENST00000637439 AFDNP55196 1824 aaKnown RBP24.1■■□□□ 1.45
CIITA-215ENST00000637439 NRXN2Q9P2S2 1712 aa24.1■■□□□ 1.45
CIITA-215ENST00000637439 A0A087WZG4 1122 aa24.08■■□□□ 1.45
CIITA-215ENST00000637439 SERPINB2P05120 415 aa24.08■■□□□ 1.45
CIITA-215ENST00000637439 GAS2L2Q8NHY3 880 aa24.08■■□□□ 1.45
CIITA-215ENST00000637439 CANXP27824 592 aaKnown RBP24.07■■□□□ 1.44
CIITA-215ENST00000637439 TEFQ10587 303 aa24.07■■□□□ 1.44
CIITA-215ENST00000637439 TEX13AQ9BXU3 409 aaPredicted RBP24.07■■□□□ 1.44
CIITA-215ENST00000637439 BCL2L12Q9HB09 334 aa24.07■■□□□ 1.44
CIITA-215ENST00000637439 SBF1O95248 1867 aa24.07■■□□□ 1.44
CIITA-215ENST00000637439 GNAT3A8MTJ3 354 aa24.06■■□□□ 1.44
CIITA-215ENST00000637439 U2SURPO15042 1029 aaKnown RBP24.06■■□□□ 1.44
CIITA-215ENST00000637439 ZC3H4Q9UPT8 1303 aaKnown RBP24.06■■□□□ 1.44
CIITA-215ENST00000637439 COL3A1P02461 1466 aaPredicted RBP24.06■■□□□ 1.44
CIITA-215ENST00000637439 EIF5P55010 431 aaKnown RBP24.05■■□□□ 1.44
CIITA-215ENST00000637439 FSTL1Q12841 308 aa24.05■■□□□ 1.44
CIITA-215ENST00000637439 DLEC1Q9Y238 1755 aa24.05■■□□□ 1.44
CIITA-215ENST00000637439 TTLL6Q8N841 843 aa24.04■■□□□ 1.44
CIITA-215ENST00000637439 TNRC6CQ9HCJ0 1690 aaKnown RBP24.03■■□□□ 1.44
CIITA-215ENST00000637439 ZNF790Q6PG37 636 aa24.03■■□□□ 1.44
CIITA-215ENST00000637439 IL17REQ8NFR9 667 aa24.03■■□□□ 1.44
CIITA-215ENST00000637439 HEG1Q9ULI3 1381 aa24.03■■□□□ 1.44
CIITA-215ENST00000637439 H0YIN7 160 aa24.02■■□□□ 1.44
CIITA-215ENST00000637439 C2CD5Q86YS7 1000 aa24.02■■□□□ 1.44
CIITA-215ENST00000637439 DNAJC5GQ8N7S2 189 aa24.02■■□□□ 1.44
CIITA-215ENST00000637439 ZNF496Q96IT1 587 aaPredicted RBP24.02■■□□□ 1.44
CIITA-215ENST00000637439 LMNB1P20700 586 aa24.01■■□□□ 1.43
CIITA-215ENST00000637439 RRAGCQ9HB90 399 aa24.01■■□□□ 1.43
CIITA-215ENST00000637439 PDZRN3Q9UPQ7 1066 aa24.01■■□□□ 1.43
CIITA-215ENST00000637439 SIPA1L3O60292 1781 aaPredicted RBP24.01■■□□□ 1.43
CIITA-215ENST00000637439 FMNL2Q96PY5 1086 aa24■■□□□ 1.43
CIITA-215ENST00000637439 WDR90Q96KV7 1748 aa24■■□□□ 1.43
CIITA-215ENST00000637439 IL6STP40189 918 aaPredicted RBP23.99■■□□□ 1.43
CIITA-215ENST00000637439 RASSF7Q02833 373 aa23.99■■□□□ 1.43
CIITA-215ENST00000637439 CNGB1Q14028 1251 aaPredicted RBP23.99■■□□□ 1.43
CIITA-215ENST00000637439 BICDL1Q6ZP65 573 aa23.99■■□□□ 1.43
CIITA-215ENST00000637439 NPM2Q86SE8 214 aaKnown RBP23.99■■□□□ 1.43
CIITA-215ENST00000637439 CFAP53Q96M91 514 aa23.99■■□□□ 1.43
CIITA-215ENST00000637439 PDE6BP35913 854 aa23.97■■□□□ 1.43
CIITA-215ENST00000637439 SCN7AQ01118 1682 aa23.97■■□□□ 1.43
CIITA-215ENST00000637439 TBC1D9BQ66K14 1250 aa23.97■■□□□ 1.43
CIITA-215ENST00000637439 CEMIPQ8WUJ3 1361 aa23.97■■□□□ 1.43
CIITA-215ENST00000637439 CARMIL3Q8ND23 1372 aa23.96■■□□□ 1.43
CIITA-215ENST00000637439 BRIP1Q9BX63 1249 aa23.96■■□□□ 1.43
CIITA-215ENST00000637439 ZNF330Q9Y3S2 320 aaPredicted RBP23.96■■□□□ 1.43
CIITA-215ENST00000637439 GLTPD2A6NH11 291 aa23.95■■□□□ 1.42
CIITA-215ENST00000637439 SMC1BQ8NDV3 1235 aa23.95■■□□□ 1.42
CIITA-215ENST00000637439 TBC1D2BQ9UPU7 963 aa23.95■■□□□ 1.42
CIITA-215ENST00000637439 BTBD11A6QL63 1104 aa23.94■■□□□ 1.42
CIITA-215ENST00000637439 NUDCQ9Y266 331 aa23.94■■□□□ 1.42
CIITA-215ENST00000637439 VEGFAP15692 232 aaPredicted RBP23.93■■□□□ 1.42
CIITA-215ENST00000637439 PRKAR2BP31323 418 aa23.93■■□□□ 1.42
CIITA-215ENST00000637439 ZNF622Q969S3 477 aaKnown RBP eCLIP23.93■■□□□ 1.42
CIITA-215ENST00000637439 ANKRD31Q8N7Z5 1873 aa23.92■■□□□ 1.42
CIITA-215ENST00000637439 PRR5LQ6MZQ0 368 aa23.92■■□□□ 1.42
CIITA-215ENST00000637439 KLRG1Q96E93 195 aa23.92■■□□□ 1.42
CIITA-215ENST00000637439 PHACTR3Q96KR7 559 aa23.92■■□□□ 1.42
CIITA-215ENST00000637439 SETDB2Q96T68 719 aa23.92■■□□□ 1.42
CIITA-215ENST00000637439 RSPH6AQ9H0K4 717 aa23.92■■□□□ 1.42
CIITA-215ENST00000637439 CCDC88AQ3V6T2 1871 aa23.92■■□□□ 1.42
CIITA-215ENST00000637439 TIAM2Q8IVF5 1701 aa23.91■■□□□ 1.42
CIITA-215ENST00000637439 NFKBIEO00221 500 aa23.91■■□□□ 1.42
CIITA-215ENST00000637439 A1BGP04217 495 aa23.91■■□□□ 1.42
CIITA-215ENST00000637439 PRELPP51888 382 aa23.91■■□□□ 1.42
CIITA-215ENST00000637439 NPHP1O15259 732 aa23.9■■□□□ 1.42
CIITA-215ENST00000637439 CAMTA2O94983 1202 aa23.89■■□□□ 1.41
CIITA-215ENST00000637439 DPY19L2Q6NUT2 758 aa23.89■■□□□ 1.41
CIITA-215ENST00000637439 CNBD1Q8NA66 436 aa23.89■■□□□ 1.41
CIITA-215ENST00000637439 RTF1Q92541 710 aaKnown RBP23.89■■□□□ 1.41
CIITA-215ENST00000637439 ST5P78524 1137 aa23.88■■□□□ 1.41
CIITA-215ENST00000637439 DZIP3Q86Y13 1208 aaKnown RBP23.88■■□□□ 1.41
CIITA-215ENST00000637439 KCNQ3O43525 872 aa23.87■■□□□ 1.41
CIITA-215ENST00000637439 C21orf2O43822 256 aa23.87■■□□□ 1.41
CIITA-215ENST00000637439 HTRA3P83110 453 aa23.87■■□□□ 1.41
CIITA-215ENST00000637439 JMYQ8N9B5 988 aa23.87■■□□□ 1.41
CIITA-215ENST00000637439 CNKSR1Q969H4 720 aa23.87■■□□□ 1.41
CIITA-215ENST00000637439 BCORQ6W2J9 1755 aa23.87■■□□□ 1.41
CIITA-215ENST00000637439 COL11A2P13942 1736 aaPredicted RBP23.87■■□□□ 1.41
CIITA-215ENST00000637439 U2AF1L5P0DN76 240 aaPredicted RBP23.86■■□□□ 1.41
CIITA-215ENST00000637439 U2AF1Q01081 240 aaKnown RBP eCLIP23.86■■□□□ 1.41
CIITA-215ENST00000637439 STYK1Q6J9G0 422 aa23.86■■□□□ 1.41
CIITA-215ENST00000637439 CLEC4GQ6UXB4 293 aa23.86■■□□□ 1.41
CIITA-215ENST00000637439 USP16Q9Y5T5 823 aa23.86■■□□□ 1.41
CIITA-215ENST00000637439 LTBP3Q9NS15 1303 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms