RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 RBM25P49756 843 aaKnown RBP19.36■□□□□ 0.69
CLN3-251ENST00000636853 LRRCC1Q9C099 1032 aa19.36■□□□□ 0.69
CLN3-251ENST00000636853 ZNF496Q96IT1 587 aaPredicted RBP19.35■□□□□ 0.69
CLN3-251ENST00000636853 HYPKQ9NX55 129 aa19.35■□□□□ 0.69
CLN3-251ENST00000636853 C5P01031 1676 aa19.35■□□□□ 0.69
CLN3-251ENST00000636853 IBTKQ9P2D0 1353 aaPredicted RBP19.35■□□□□ 0.69
CLN3-251ENST00000636853 SDSP20132 328 aa19.35■□□□□ 0.69
CLN3-251ENST00000636853 AIMP1Q12904 312 aaKnown RBP19.35■□□□□ 0.69
CLN3-251ENST00000636853 KSR2Q6VAB6 950 aa19.35■□□□□ 0.69
CLN3-251ENST00000636853 PPP1R42Q7Z4L9 355 aa19.35■□□□□ 0.69
CLN3-251ENST00000636853 DDX21Q9NR30 783 aaKnown RBP eCLIP19.35■□□□□ 0.69
CLN3-251ENST00000636853 PDIA6Q15084 440 aa19.34■□□□□ 0.69
CLN3-251ENST00000636853 PDE1AP54750 535 aa19.34■□□□□ 0.69
CLN3-251ENST00000636853 SSH3Q8TE77 659 aa19.34■□□□□ 0.69
CLN3-251ENST00000636853 COL5A2P05997 1499 aaPredicted RBP19.33■□□□□ 0.69
CLN3-251ENST00000636853 ABCA3Q99758 1704 aa19.33■□□□□ 0.69
CLN3-251ENST00000636853 SLKQ9H2G2 1235 aaPredicted RBP19.33■□□□□ 0.68
CLN3-251ENST00000636853 PLEKHG2Q9H7P9 1386 aa19.33■□□□□ 0.68
CLN3-251ENST00000636853 HSP90AB1P08238 724 aaKnown RBP19.32■□□□□ 0.68
CLN3-251ENST00000636853 CABP4P57796 275 aa19.32■□□□□ 0.68
CLN3-251ENST00000636853 TSHZ3Q63HK5 1081 aa19.32■□□□□ 0.68
CLN3-251ENST00000636853 STRN4Q9NRL3 753 aa19.32■□□□□ 0.68
CLN3-251ENST00000636853 MRC1P22897 1456 aa19.32■□□□□ 0.68
CLN3-251ENST00000636853 MYL6BP14649 208 aa19.32■□□□□ 0.68
CLN3-251ENST00000636853 CWF19L2Q2TBE0 894 aaKnown RBP19.32■□□□□ 0.68
CLN3-251ENST00000636853 TTC5Q8N0Z6 440 aa19.32■□□□□ 0.68
CLN3-251ENST00000636853 SRGAP3O43295 1099 aa19.31■□□□□ 0.68
CLN3-251ENST00000636853 OSBPL3Q9H4L5 887 aa19.31■□□□□ 0.68
CLN3-251ENST00000636853 POLA2Q14181 598 aa19.31■□□□□ 0.68
CLN3-251ENST00000636853 NFKBIBQ15653 356 aa19.31■□□□□ 0.68
CLN3-251ENST00000636853 ZCRB1Q8TBF4 217 aaKnown RBP19.31■□□□□ 0.68
CLN3-251ENST00000636853 SURF6O75683 361 aaKnown RBP19.3■□□□□ 0.68
CLN3-251ENST00000636853 SPRYD3Q8NCJ5 442 aa19.3■□□□□ 0.68
CLN3-251ENST00000636853 C9orf78Q9NZ63 289 aaPredicted RBP19.3■□□□□ 0.68
CLN3-251ENST00000636853 USP16Q9Y5T5 823 aa19.3■□□□□ 0.68
CLN3-251ENST00000636853 SALL3Q9BXA9 1300 aa19.3■□□□□ 0.68
CLN3-251ENST00000636853 NHSL1Q5SYE7 1610 aa19.3■□□□□ 0.68
CLN3-251ENST00000636853 PARP4Q9UKK3 1724 aaKnown RBP19.3■□□□□ 0.68
CLN3-251ENST00000636853 DDX58O95786 925 aaKnown RBP19.3■□□□□ 0.68
CLN3-251ENST00000636853 LARP1Q6PKG0 1096 aaKnown RBP19.3■□□□□ 0.68
CLN3-251ENST00000636853 IL1RAPL2Q9NP60 686 aa19.3■□□□□ 0.68
CLN3-251ENST00000636853 ALDH1L1O75891 902 aa19.29■□□□□ 0.68
CLN3-251ENST00000636853 PIP4K2AP48426 406 aaPredicted RBP19.29■□□□□ 0.68
CLN3-251ENST00000636853 EVA1CP58658 441 aa19.29■□□□□ 0.68
CLN3-251ENST00000636853 KIF2CQ99661 725 aa19.29■□□□□ 0.68
CLN3-251ENST00000636853 SNRPA1P09661 255 aaKnown RBP19.28■□□□□ 0.68
CLN3-251ENST00000636853 FMNL2Q96PY5 1086 aa19.28■□□□□ 0.68
CLN3-251ENST00000636853 PCDH11XQ9BZA7 1347 aa19.28■□□□□ 0.68
CLN3-251ENST00000636853 PCDH11YQ9BZA8 1340 aa19.28■□□□□ 0.68
CLN3-251ENST00000636853 MX1P20591 662 aa19.28■□□□□ 0.68
CLN3-251ENST00000636853 CARD10Q9BWT7 1032 aa19.28■□□□□ 0.68
CLN3-251ENST00000636853 RIC3Q7Z5B4 369 aa19.27■□□□□ 0.68
CLN3-251ENST00000636853 XAGE3Q8WTP9 111 aa19.27■□□□□ 0.68
CLN3-251ENST00000636853 IL2RBP14784 551 aa19.27■□□□□ 0.68
CLN3-251ENST00000636853 COPS6Q7L5N1 327 aa19.27■□□□□ 0.68
CLN3-251ENST00000636853 LINS1Q8NG48 757 aa19.27■□□□□ 0.68
CLN3-251ENST00000636853 DDX54Q8TDD1 881 aaKnown RBP19.26■□□□□ 0.67
CLN3-251ENST00000636853 ANTXR1Q9H6X2 564 aa19.26■□□□□ 0.67
CLN3-251ENST00000636853 RAB11FIP3O75154 756 aa19.26■□□□□ 0.67
CLN3-251ENST00000636853 HSCBQ8IWL3 235 aa19.26■□□□□ 0.67
CLN3-251ENST00000636853 CASC1Q6TDU7 716 aa19.25■□□□□ 0.67
CLN3-251ENST00000636853 NUTM1Q86Y26 1132 aa19.25■□□□□ 0.67
CLN3-251ENST00000636853 RHPN1Q8TCX5 695 aa19.25■□□□□ 0.67
CLN3-251ENST00000636853 GRM8O00222 908 aa19.24■□□□□ 0.67
CLN3-251ENST00000636853 IGKV5-2P06315 115 aa19.24■□□□□ 0.67
CLN3-251ENST00000636853 LRP10Q7Z4F1 713 aa19.24■□□□□ 0.67
CLN3-251ENST00000636853 RBM42Q9BTD8 480 aaKnown RBP19.23■□□□□ 0.67
CLN3-251ENST00000636853 STAP2Q9UGK3 403 aa19.23■□□□□ 0.67
CLN3-251ENST00000636853 TUBGCP6Q96RT7 1819 aa19.23■□□□□ 0.67
CLN3-251ENST00000636853 FRAT2O75474 233 aaPredicted RBP19.23■□□□□ 0.67
CLN3-251ENST00000636853 USP26Q9BXU7 913 aa19.23■□□□□ 0.67
CLN3-251ENST00000636853 MTX1Q13505 466 aa19.22■□□□□ 0.67
CLN3-251ENST00000636853 SNX21Q969T3 373 aa19.22■□□□□ 0.67
CLN3-251ENST00000636853 KIF1BPQ96EK5 621 aa19.22■□□□□ 0.67
CLN3-251ENST00000636853 SUCLG2Q96I99 432 aa19.22■□□□□ 0.67
CLN3-251ENST00000636853 EIF5BO60841 1220 aaKnown RBP19.22■□□□□ 0.67
CLN3-251ENST00000636853 KAZALD1Q96I82 304 aa19.22■□□□□ 0.67
CLN3-251ENST00000636853 MYD88Q99836 296 aa19.22■□□□□ 0.67
CLN3-251ENST00000636853 SHANK3Q9BYB0 1731 aa19.22■□□□□ 0.67
CLN3-251ENST00000636853 GLI3P10071 1580 aa19.21■□□□□ 0.67
CLN3-251ENST00000636853 TRIM6-TRIM34B2RNG4 842 aa19.21■□□□□ 0.67
CLN3-251ENST00000636853 ERVV-2B6SEH9 535 aa19.21■□□□□ 0.67
CLN3-251ENST00000636853 ANKRD13DQ6ZTN6 518 aa19.21■□□□□ 0.67
CLN3-251ENST00000636853 RILPL2Q969X0 211 aa19.21■□□□□ 0.67
CLN3-251ENST00000636853 NEURL1BA8MQ27 555 aa19.21■□□□□ 0.67
CLN3-251ENST00000636853 NEXNQ0ZGT2 675 aa19.21■□□□□ 0.67
CLN3-251ENST00000636853 OS9Q13438 667 aaPredicted RBP19.21■□□□□ 0.67
CLN3-251ENST00000636853 NKX1-1Q15270 411 aaPredicted RBP19.21■□□□□ 0.67
CLN3-251ENST00000636853 METTL22Q9BUU2 404 aaPredicted RBP19.21■□□□□ 0.67
CLN3-251ENST00000636853 BTG4Q9NY30 223 aa19.21■□□□□ 0.67
CLN3-251ENST00000636853 PA2G4Q9UQ80 394 aaKnown RBP19.21■□□□□ 0.67
CLN3-251ENST00000636853 UTYO14607 1347 aa19.2■□□□□ 0.66
CLN3-251ENST00000636853 CD2BP2O95400 341 aaKnown RBP19.2■□□□□ 0.66
CLN3-251ENST00000636853 BICC1Q9H694 974 aaKnown RBP19.2■□□□□ 0.66
CLN3-251ENST00000636853 UNC5CLQ8IV45 518 aa19.2■□□□□ 0.66
CLN3-251ENST00000636853 HDAC5Q9UQL6 1122 aa19.2■□□□□ 0.66
CLN3-251ENST00000636853 ERC2O15083 957 aa19.19■□□□□ 0.66
CLN3-251ENST00000636853 HSP90AB4PQ58FF6 505 aa19.19■□□□□ 0.66
CLN3-251ENST00000636853 GCKRQ14397 625 aa19.18■□□□□ 0.66
CLN3-251ENST00000636853 LAMB4A4D0S4 1761 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms