RNA–Protein interactions for RNA: ENST00000636610.1

CACNA1A-228, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 3,011 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-228ENST00000636610 PPP1R9BQ96SB3 815 aa17■□□□□ 0.31
CACNA1A-228ENST00000636610 USP31Q70CQ4 1352 aa17■□□□□ 0.31
CACNA1A-228ENST00000636610 TECPR2O15040 1411 aa17■□□□□ 0.31
CACNA1A-228ENST00000636610 PTMAP06454 111 aaKnown RBP17■□□□□ 0.31
CACNA1A-228ENST00000636610 BRD1O95696 1058 aa16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 CWF19L2Q2TBE0 894 aaKnown RBP16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 USP48Q86UV5 1035 aa16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 JARID2Q92833 1246 aaPredicted RBP16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 TCEANC2Q96MN5 208 aa16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 ZNF830Q96NB3 372 aaPredicted RBP16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 SIL1Q9H173 461 aa16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 CNPY2Q9Y2B0 182 aa16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 FIBPO43427 364 aa16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 PROSER3Q2NL68 480 aa16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 CCDC9Q9Y3X0 531 aaKnown RBP16.99■□□□□ 0.31
CACNA1A-228ENST00000636610 TEFQ10587 303 aa16.98■□□□□ 0.31
CACNA1A-228ENST00000636610 TTC21AQ8NDW8 1320 aa16.98■□□□□ 0.31
CACNA1A-228ENST00000636610 MAP3K5Q99683 1374 aa16.98■□□□□ 0.31
CACNA1A-228ENST00000636610 LRSAM1Q6UWE0 723 aa16.98■□□□□ 0.31
CACNA1A-228ENST00000636610 PIP4K2AP48426 406 aaPredicted RBP16.97■□□□□ 0.31
CACNA1A-228ENST00000636610 COL9A3Q14050 684 aaPredicted RBP16.97■□□□□ 0.31
CACNA1A-228ENST00000636610 ESCO1Q5FWF5 840 aa16.97■□□□□ 0.31
CACNA1A-228ENST00000636610 CASTP20810 708 aaKnown RBP16.97■□□□□ 0.31
CACNA1A-228ENST00000636610 ZNF530Q6P9A1 599 aaPredicted RBP16.97■□□□□ 0.31
CACNA1A-228ENST00000636610 C9orf78Q9NZ63 289 aaPredicted RBP16.97■□□□□ 0.31
CACNA1A-228ENST00000636610 AGLP35573 1532 aa16.97■□□□□ 0.31
CACNA1A-228ENST00000636610 LARGE1O95461 756 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 AK2P54819 239 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 KDRP35968 1356 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 BTBD11A6QL63 1104 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 KLHDC4Q8TBB5 520 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 SSH3Q8TE77 659 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 DNAAF4Q8WXU2 420 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 SNX14Q9Y5W7 946 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 AKAP12Q02952 1782 aa16.96■□□□□ 0.31
CACNA1A-228ENST00000636610 PRPF40BQ6NWY9 871 aaKnown RBP16.96■□□□□ 0.3
CACNA1A-228ENST00000636610 CCDC83Q8IWF9 413 aa16.96■□□□□ 0.3
CACNA1A-228ENST00000636610 PI4K2BQ8TCG2 481 aa16.96■□□□□ 0.3
CACNA1A-228ENST00000636610 NECAB1Q8N987 351 aa16.95■□□□□ 0.3
CACNA1A-228ENST00000636610 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.95■□□□□ 0.3
CACNA1A-228ENST00000636610 PTH1RQ03431 593 aa16.95■□□□□ 0.3
CACNA1A-228ENST00000636610 ADCK5Q3MIX3 580 aa16.95■□□□□ 0.3
CACNA1A-228ENST00000636610 DIAPH3Q9NSV4 1193 aa16.95■□□□□ 0.3
CACNA1A-228ENST00000636610 KCNJ4P48050 445 aa16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 EIF4A1P60842 406 aaKnown RBP16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 PSME1Q06323 249 aa16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 CCDC8Q9H0W5 538 aaPredicted RBP16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 CUL4AQ13619 759 aa16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 STAP2Q9UGK3 403 aa16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 MAP3K2Q9Y2U5 619 aa16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 PLEKHG1Q9ULL1 1385 aa16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 FERMT3Q86UX7 667 aa16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 FAM13BQ9NYF5 915 aa16.94■□□□□ 0.3
CACNA1A-228ENST00000636610 SSH2Q76I76 1423 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 VPS37CA5D8V6 355 aaPredicted RBP16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 HSPA4P34932 840 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 FAM173BQ6P4H8 233 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 RUFY3Q7L099 469 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 C17orf53Q8N3J3 647 aaPredicted RBP16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 KIF1BPQ96EK5 621 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 JAKMIP1Q96N16 626 aaKnown RBP16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 NDUFB9Q9Y6M9 179 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 RGPD8O14715 1765 aaPredicted RBP16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 SGSM2O43147 1006 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 CNTROBQ8N137 903 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 TSPY26PQ9H489 355 aa16.93■□□□□ 0.3
CACNA1A-228ENST00000636610 NRKQ7Z2Y5 1582 aa16.92■□□□□ 0.3
CACNA1A-228ENST00000636610 MCM2P49736 904 aa16.92■□□□□ 0.3
CACNA1A-228ENST00000636610 BEND3Q5T5X7 828 aa16.92■□□□□ 0.3
CACNA1A-228ENST00000636610 USP25Q9UHP3 1055 aa16.92■□□□□ 0.3
CACNA1A-228ENST00000636610 UBE2Q2Q8WVN8 375 aa16.92■□□□□ 0.3
CACNA1A-228ENST00000636610 PHF8Q9UPP1 1060 aa16.92■□□□□ 0.3
CACNA1A-228ENST00000636610 HCLS1P14317 486 aaPredicted RBP16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 SLC39A6Q13433 755 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 AACSQ86V21 672 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 VSIG10Q8N0Z9 540 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 MBD3O95983 291 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 MYL6BP14649 208 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 SYT1P21579 422 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 SMC3Q9UQE7 1217 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 TBX22Q9Y458 520 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 IFIT2P09913 472 aaKnown RBP16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 EDC3Q96F86 508 aaKnown RBP16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 FAM227BQ96M60 508 aa16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 LSG1Q9H089 658 aaKnown RBP16.91■□□□□ 0.3
CACNA1A-228ENST00000636610 ANAPC15P60006 121 aa16.9■□□□□ 0.3
CACNA1A-228ENST00000636610 GIMAP6Q6P9H5 292 aa16.9■□□□□ 0.3
CACNA1A-228ENST00000636610 CLASRPQ8N2M8 674 aaKnown RBP16.9■□□□□ 0.3
CACNA1A-228ENST00000636610 HTATSF1O43719 755 aaKnown RBP16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 PPFIA3O75145 1194 aa16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 CHGBP05060 677 aa16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 DNM1Q05193 864 aaKnown RBP16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 STK3Q13188 491 aa16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 DNTTIP2Q5QJE6 756 aaKnown RBP16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 BOLA2Q9H3K6 86 aa16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 TLR7Q9NYK1 1049 aaKnown RBP16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 REREQ9P2R6 1566 aa16.89■□□□□ 0.29
CACNA1A-228ENST00000636610 RAD50Q92878 1312 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms