RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 TBC1D5Q92609 795 aa6.92□□□□□ -1.3
SCN1A-212ENST00000636194 PYM1Q9BRP8 204 aaKnown RBP6.92□□□□□ -1.3
SCN1A-212ENST00000636194 ATF7IPQ6VMQ6 1270 aa6.92□□□□□ -1.3
SCN1A-212ENST00000636194 CPLX3Q8WVH0 158 aa6.92□□□□□ -1.3
SCN1A-212ENST00000636194 STIM2Q9P246 746 aa6.92□□□□□ -1.3
SCN1A-212ENST00000636194 CCDC18Q5T9S5 1454 aa6.92□□□□□ -1.3
SCN1A-212ENST00000636194 PDCD2Q16342 344 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-212ENST00000636194 MUM1L1Q5H9M0 696 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 MAFGO15525 162 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 CEP128Q6ZU80 1094 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 SETDB1Q15047 1291 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 CCDC144CPQ8IYA2 1237 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCN1A-212ENST00000636194 RNF8O76064 485 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 TDO2P48775 406 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 CFAP157Q5JU67 520 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 EFCAB2Q5VUJ9 269 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 PDCD7Q8N8D1 485 aaKnown RBP6.91□□□□□ -1.3
SCN1A-212ENST00000636194 CASQ1P31415 396 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 MSL1Q68DK7 614 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 TAOK1Q7L7X3 1001 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 NUF2Q9BZD4 464 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 GBP6Q6ZN66 633 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 CRACR2BQ8N4Y2 399 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-212ENST00000636194 CCDC12Q8WUD4 166 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-212ENST00000636194 PRKRIP1Q9H875 184 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-212ENST00000636194 RAI14Q9P0K7 980 aa6.91□□□□□ -1.3
SCN1A-212ENST00000636194 KRT85P78386 507 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 MAPK8IP2Q13387 824 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-212ENST00000636194 PHLDB2Q86SQ0 1253 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 BICDL2A1A5D9 508 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 BAG4O95429 457 aaKnown RBP6.9□□□□□ -1.3
SCN1A-212ENST00000636194 ERCC3P19447 782 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 TACC3Q9Y6A5 838 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 AMPD3Q01432 767 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 PPP4R3BQ5MIZ7 849 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 VCX3BQ9H321 246 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 ANKRD12Q6UB98 2062 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 A0A087WZG4 1122 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 GOLIM4O00461 696 aa6.9□□□□□ -1.3
SCN1A-212ENST00000636194 CASQ2O14958 399 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-212ENST00000636194 USP5P45974 858 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 INPP1P49441 399 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 FMNL3Q8IVF7 1028 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 KIAA0753Q2KHM9 967 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 CFAP100Q494V2 611 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 SRGAP1Q7Z6B7 1085 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 VTI1AQ96AJ9 217 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC77Q9BR77 488 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 CALCOCO1Q9P1Z2 691 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 TSPYL4Q9UJ04 414 aa6.9□□□□□ -1.31
SCN1A-212ENST00000636194 ERICH4A6NGS2 130 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 TRAF1Q13077 416 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 NUP133Q8WUM0 1156 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 IFT74Q96LB3 600 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 HAUS8Q9BT25 410 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 ARHGAP25P42331 645 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 TMCO4Q5TGY1 634 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 NAA16Q6N069 864 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-212ENST00000636194 FAM177A1Q8N128 213 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-212ENST00000636194 HVCN1Q96D96 273 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 IMPG2Q9BZV3 1241 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 CPSF2Q9P2I0 782 aaKnown RBP6.89□□□□□ -1.31
SCN1A-212ENST00000636194 STX6O43752 255 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 MYO1BO43795 1136 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 HLTFQ14527 1009 aaKnown RBP eCLIP6.89□□□□□ -1.316e-7■■■■□ 22.5
SCN1A-212ENST00000636194 KRT32Q14532 448 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 MVPQ14764 893 aaKnown RBP6.89□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC30Q5VVM6 783 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 C10orf67Q8IYJ2 551 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 SYCP3Q8IZU3 236 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 ATRIPQ8WXE1 791 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 LRRC27Q9C0I9 530 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 NUP155O75694 1391 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 GNAI1P63096 354 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 GEN1Q17RS7 908 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 TRIM7Q9C029 511 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC144AA2RUR9 1427 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 GNAI3P08754 354 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 RAP1GDS1P52306 607 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 CTR9Q6PD62 1173 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 WDR46O15213 610 aaKnown RBP6.89□□□□□ -1.31
SCN1A-212ENST00000636194 MCM6Q14566 821 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 CGNQ9P2M7 1197 aaKnown RBP6.89□□□□□ -1.31
SCN1A-212ENST00000636194 CYP46A1Q9Y6A2 500 aa6.89□□□□□ -1.31
SCN1A-212ENST00000636194 CDC45O75419 566 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC63Q8NA47 563 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 RABGAP1Q9Y3P9 1069 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 PUF60Q9UHX1 559 aaKnown RBP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 SYF2O95926 243 aaKnown RBP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 UPF3BQ9BZI7 483 aaKnown RBP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC7Q96M83 1385 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 CACNA2D3Q8IZS8 1091 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 ZRANB2O95218 330 aaKnown RBP eCLIP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 SLC8A3P57103 927 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 SCAPERQ9BY12 1400 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 WDR33Q9C0J8 1336 aaKnown RBP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 HSF2BPO75031 334 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 BICD1Q96G01 975 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 TRIM55Q9BYV6 548 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms