RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 CLUAP1Q96AJ1 413 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 CHMP4AQ9BY43 222 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 ATG3Q9NT62 314 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 CHPF2Q9P2E5 772 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 ASAP1Q9ULH1 1129 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 N4BP2Q86UW6 1770 aaPredicted RBP13.6□□□□□ -0.23
CPNE3-212ENST00000621783 PTPRCP08575 1304 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 API5Q9BZZ5 524 aaKnown RBP13.59□□□□□ -0.23
CPNE3-212ENST00000621783 COG6Q9Y2V7 657 aa13.59□□□□□ -0.23
CPNE3-212ENST00000621783 ABCC4O15439 1325 aa13.59□□□□□ -0.23
CPNE3-212ENST00000621783 BTAF1O14981 1849 aa13.58□□□□□ -0.24
CPNE3-212ENST00000621783 SBF2Q86WG5 1849 aa13.58□□□□□ -0.24
CPNE3-212ENST00000621783 PTCD1O75127 700 aaKnown RBP13.58□□□□□ -0.24
CPNE3-212ENST00000621783 RBM6P78332 1123 aaKnown RBP13.58□□□□□ -0.24
CPNE3-212ENST00000621783 FLIIQ13045 1269 aa13.58□□□□□ -0.24
CPNE3-212ENST00000621783 PXDNLA1KZ92 1463 aa13.57□□□□□ -0.24
CPNE3-212ENST00000621783 MVPQ14764 893 aaKnown RBP13.57□□□□□ -0.24
CPNE3-212ENST00000621783 TMEM57Q8N5G2 664 aa13.57□□□□□ -0.24
CPNE3-212ENST00000621783 PPP4R2Q9NY27 417 aa13.57□□□□□ -0.24
CPNE3-212ENST00000621783 DBF4Q9UBU7 674 aaPredicted RBP13.57□□□□□ -0.24
CPNE3-212ENST00000621783 KCNQ2O43526 872 aa13.56□□□□□ -0.24
CPNE3-212ENST00000621783 ANXA1P04083 346 aa13.56□□□□□ -0.24
CPNE3-212ENST00000621783 PROSER3Q2NL68 480 aa13.56□□□□□ -0.24
CPNE3-212ENST00000621783 FAM182BQ5T319 152 aa13.56□□□□□ -0.24
CPNE3-212ENST00000621783 ITPRIPQ8IWB1 547 aa13.56□□□□□ -0.24
CPNE3-212ENST00000621783 USP16Q9Y5T5 823 aa13.56□□□□□ -0.24
CPNE3-212ENST00000621783 PALLDQ8WX93 1383 aa13.56□□□□□ -0.24
CPNE3-212ENST00000621783 PDIA6Q15084 440 aa13.55□□□□□ -0.24
CPNE3-212ENST00000621783 VSIG10Q8N0Z9 540 aa13.55□□□□□ -0.24
CPNE3-212ENST00000621783 RBM42Q9BTD8 480 aaKnown RBP13.55□□□□□ -0.24
CPNE3-212ENST00000621783 PHAXQ9H814 394 aaKnown RBP13.55□□□□□ -0.24
CPNE3-212ENST00000621783 DDX21Q9NR30 783 aaKnown RBP eCLIP13.55□□□□□ -0.24
CPNE3-212ENST00000621783 RGS17Q9UGC6 210 aaPredicted RBP13.55□□□□□ -0.24
CPNE3-212ENST00000621783 ZNF831Q5JPB2 1677 aa13.55□□□□□ -0.24
CPNE3-212ENST00000621783 ERBB4Q15303 1308 aa13.55□□□□□ -0.24
CPNE3-212ENST00000621783 RREB1Q92766 1687 aa13.54□□□□□ -0.24
CPNE3-212ENST00000621783 FKBP5Q13451 457 aaPredicted RBP13.54□□□□□ -0.24
CPNE3-212ENST00000621783 DNAJC10Q8IXB1 793 aa13.54□□□□□ -0.24
CPNE3-212ENST00000621783 SLC4A9Q96Q91 983 aa13.54□□□□□ -0.24
CPNE3-212ENST00000621783 HYPKQ9NX55 129 aa13.54□□□□□ -0.24
CPNE3-212ENST00000621783 COL5A3P25940 1745 aaPredicted RBP13.53□□□□□ -0.24
CPNE3-212ENST00000621783 F6X3S4 739 aa13.53□□□□□ -0.24
CPNE3-212ENST00000621783 KRT27Q7Z3Y8 459 aa13.53□□□□□ -0.24
CPNE3-212ENST00000621783 SMARCC1Q92922 1105 aaPredicted RBP13.53□□□□□ -0.24
CPNE3-212ENST00000621783 DDX19BQ9UMR2 479 aa13.53□□□□□ -0.24
CPNE3-212ENST00000621783 LY75O60449 1722 aa13.53□□□□□ -0.24
CPNE3-212ENST00000621783 MYL6BP14649 208 aa13.52□□□□□ -0.25
CPNE3-212ENST00000621783 RXRBP28702 533 aa13.52□□□□□ -0.25
CPNE3-212ENST00000621783 PIP4K2AP48426 406 aaPredicted RBP13.52□□□□□ -0.25
CPNE3-212ENST00000621783 B4GALNT3Q6L9W6 998 aa13.52□□□□□ -0.25
CPNE3-212ENST00000621783 PTF1AQ7RTS3 328 aa13.52□□□□□ -0.25
CPNE3-212ENST00000621783 LRP10Q7Z4F1 713 aa13.52□□□□□ -0.25
CPNE3-212ENST00000621783 TEX13AQ9BXU3 409 aaPredicted RBP13.52□□□□□ -0.25
CPNE3-212ENST00000621783 ADCY9O60503 1353 aa13.52□□□□□ -0.25
CPNE3-212ENST00000621783 ARFGEF2Q9Y6D5 1785 aa13.52□□□□□ -0.25
CPNE3-212ENST00000621783 KAT6BQ8WYB5 2073 aa13.52□□□□□ -0.25
CPNE3-212ENST00000621783 NUP188Q5SRE5 1749 aa13.51□□□□□ -0.25
CPNE3-212ENST00000621783 NBPF26B4DH59 902 aa13.51□□□□□ -0.25
CPNE3-212ENST00000621783 NBPF14Q5TI25 921 aa13.51□□□□□ -0.25
CPNE3-212ENST00000621783 INTS3Q68E01 1043 aaKnown RBP13.51□□□□□ -0.25
CPNE3-212ENST00000621783 NBPF10Q6P3W6 841 aaKnown RBP13.51□□□□□ -0.25
CPNE3-212ENST00000621783 POTEAQ6S8J7 498 aa13.51□□□□□ -0.25
CPNE3-212ENST00000621783 NBPF15Q8N660 670 aa13.51□□□□□ -0.25
CPNE3-212ENST00000621783 ATP10DQ9P241 1426 aa13.5□□□□□ -0.25
CPNE3-212ENST00000621783 LOC102724428A0A0B4J2F2 783 aa13.5□□□□□ -0.25
CPNE3-212ENST00000621783 A1BGP04217 495 aa13.5□□□□□ -0.25
CPNE3-212ENST00000621783 CCT4P50991 539 aaKnown RBP13.5□□□□□ -0.25
CPNE3-212ENST00000621783 SIK1P57059 783 aa13.5□□□□□ -0.25
CPNE3-212ENST00000621783 AAMPQ13685 434 aa13.5□□□□□ -0.25
CPNE3-212ENST00000621783 SLC4A10Q6U841 1118 aa13.5□□□□□ -0.25
CPNE3-212ENST00000621783 XAGE3Q8WTP9 111 aa13.5□□□□□ -0.25
CPNE3-212ENST00000621783 CCDC136Q96JN2 1154 aa13.5□□□□□ -0.25
CPNE3-212ENST00000621783 STARD3NLO95772 234 aa13.49□□□□□ -0.25
CPNE3-212ENST00000621783 CYP19A1P11511 503 aaPredicted RBP13.49□□□□□ -0.25
CPNE3-212ENST00000621783 FAM196AQ6ZSG2 479 aa13.49□□□□□ -0.25
CPNE3-212ENST00000621783 PI4KAP2A4QPH2 592 aa13.48□□□□□ -0.25
CPNE3-212ENST00000621783 DDX58O95786 925 aaKnown RBP13.48□□□□□ -0.25
CPNE3-212ENST00000621783 ATP6V1AP38606 617 aa13.48□□□□□ -0.25
CPNE3-212ENST00000621783 AIMP1Q12904 312 aaKnown RBP13.48□□□□□ -0.25
CPNE3-212ENST00000621783 ITPK1Q13572 414 aa13.48□□□□□ -0.25
CPNE3-212ENST00000621783 COPS6Q7L5N1 327 aa13.48□□□□□ -0.25
CPNE3-212ENST00000621783 PI4KAP1Q8N8J0 262 aa13.48□□□□□ -0.25
CPNE3-212ENST00000621783 DNAAF4Q8WXU2 420 aa13.48□□□□□ -0.25
CPNE3-212ENST00000621783 BCL11BQ9C0K0 894 aaPredicted RBP13.48□□□□□ -0.25
CPNE3-212ENST00000621783 MAP3K2Q9Y2U5 619 aa13.48□□□□□ -0.25
CPNE3-212ENST00000621783 ZBTB7BO15156 539 aaPredicted RBP13.47□□□□□ -0.25
CPNE3-212ENST00000621783 KSR2Q6VAB6 950 aa13.47□□□□□ -0.25
CPNE3-212ENST00000621783 CHMP4BQ9H444 224 aaKnown RBP13.47□□□□□ -0.25
CPNE3-212ENST00000621783 ZBTB40Q9NUA8 1239 aa13.47□□□□□ -0.25
CPNE3-212ENST00000621783 ZBTB1Q9Y2K1 713 aa13.46□□□□□ -0.25
CPNE3-212ENST00000621783 TNS1Q9HBL0 1735 aaKnown RBP13.46□□□□□ -0.25
CPNE3-212ENST00000621783 TAF1LQ8IZX4 1826 aa13.46□□□□□ -0.26
CPNE3-212ENST00000621783 BEND3Q5T5X7 828 aa13.45□□□□□ -0.26
CPNE3-212ENST00000621783 TTLL7Q6ZT98 887 aa13.45□□□□□ -0.26
CPNE3-212ENST00000621783 MEIS3Q99687 375 aa13.45□□□□□ -0.26
CPNE3-212ENST00000621783 PCDHB15Q9Y5E8 787 aa13.45□□□□□ -0.26
CPNE3-212ENST00000621783 AFDNP55196 1824 aaKnown RBP13.45□□□□□ -0.26
CPNE3-212ENST00000621783 TRIM37O94972 964 aa13.44□□□□□ -0.26
CPNE3-212ENST00000621783 CRKLP46109 303 aaKnown RBP13.44□□□□□ -0.26
CPNE3-212ENST00000621783 INTS5Q6P9B9 1019 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms