RNA–Protein interactions for RNA: ENST00000618999.4

SRGAP3-213, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 5 BASIC

Gene SRGAP3, Length 3,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-213ENST00000618999 KIF1AQ12756 1690 aa8.58□□□□□ -1.04
SRGAP3-213ENST00000618999 A0A0U1RQG5 324 aaPredicted RBP8.58□□□□□ -1.04
SRGAP3-213ENST00000618999 UBAP1LF5GYI3 381 aa8.58□□□□□ -1.04
SRGAP3-213ENST00000618999 VAMP4O75379 141 aa8.58□□□□□ -1.04
SRGAP3-213ENST00000618999 ZNF853P0CG23 659 aa8.58□□□□□ -1.04
SRGAP3-213ENST00000618999 CHL1O00533 1208 aa8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 HTATSF1O43719 755 aaKnown RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 NASPP49321 788 aaPredicted RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 HDAC1Q13547 482 aaPredicted RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 IL17REQ8NFR9 667 aa8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 FSD2A1L4K1 749 aa8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 NUTM2BA6NNL0 878 aaPredicted RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 NUTM2EB1AL46 878 aaPredicted RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 TPM2P07951 284 aa8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 TRIM27P14373 513 aa8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 TAF7Q15545 349 aaPredicted RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 RBM26Q5T8P6 1007 aaKnown RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 NUTM2AQ8IVF1 878 aaPredicted RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 MAP3K5Q99683 1374 aa8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 TNPO1Q92973 898 aaKnown RBP8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 LGR6Q9HBX8 967 aa8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 NFAT5O94916 1531 aa8.57□□□□□ -1.04
SRGAP3-213ENST00000618999 ADAMTS2O95450 1211 aa8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 CCDC173Q0VFZ6 552 aa8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 FAM117AQ9C073 453 aa8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 ALDH1L2Q3SY69 923 aa8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 AKAP4Q5JQC9 854 aa8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 SPG7Q9UQ90 795 aa8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 CHD1LQ86WJ1 897 aa8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 TMEM57Q8N5G2 664 aa8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 PPP1R1BQ9UD71 204 aaPredicted RBP8.56□□□□□ -1.04
SRGAP3-213ENST00000618999 K7ELQ4 463 aaPredicted RBP8.55□□□□□ -1.04
SRGAP3-213ENST00000618999 PXDNQ92626 1479 aa8.55□□□□□ -1.04
SRGAP3-213ENST00000618999 PTMAP06454 111 aaKnown RBP8.55□□□□□ -1.04
SRGAP3-213ENST00000618999 STK31Q9BXU1 1019 aa8.55□□□□□ -1.04
SRGAP3-213ENST00000618999 EIF2S2P20042 333 aaKnown RBP8.55□□□□□ -1.04
SRGAP3-213ENST00000618999 CHMP4AQ9BY43 222 aa8.55□□□□□ -1.04
SRGAP3-213ENST00000618999 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.54□□□□□ -1.04
SRGAP3-213ENST00000618999 SNX21Q969T3 373 aa8.54□□□□□ -1.04
SRGAP3-213ENST00000618999 BTG4Q9NY30 223 aa8.54□□□□□ -1.04
SRGAP3-213ENST00000618999 BTBD11A6QL63 1104 aa8.54□□□□□ -1.04
SRGAP3-213ENST00000618999 DDX54Q8TDD1 881 aaKnown RBP8.54□□□□□ -1.04
SRGAP3-213ENST00000618999 GCC1Q96CN9 775 aa8.54□□□□□ -1.04
SRGAP3-213ENST00000618999 SLIT3O75094 1523 aa8.54□□□□□ -1.04
SRGAP3-213ENST00000618999 NUCB2P80303 420 aa8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 LARP1Q6PKG0 1096 aaKnown RBP8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 SMC5Q8IY18 1101 aa8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 MRPL50Q8N5N7 158 aaKnown RBP8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 MED1Q15648 1581 aaPredicted RBP8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 RNMTO43148 476 aaKnown RBP8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 CDC45O75419 566 aa8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 IFNL2Q8IZJ0 200 aa8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 ST18O60284 1047 aa8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 API5Q9BZZ5 524 aaKnown RBP8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 LTN1O94822 1766 aa8.53□□□□□ -1.04
SRGAP3-213ENST00000618999 WDR17Q8IZU2 1322 aa8.52□□□□□ -1.04
SRGAP3-213ENST00000618999 TTLL12Q14166 644 aaPredicted RBP8.52□□□□□ -1.04
SRGAP3-213ENST00000618999 BMP2KLQ5H9B9 411 aa8.52□□□□□ -1.04
SRGAP3-213ENST00000618999 MCTP1Q6DN14 999 aa8.52□□□□□ -1.04
SRGAP3-213ENST00000618999 KIAA1211Q6ZU35 1233 aa8.52□□□□□ -1.04
SRGAP3-213ENST00000618999 CPDO75976 1380 aa8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 TRPM3Q9HCF6 1732 aaPredicted RBP8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 A0A0G2JS52 829 aa8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 NUCB1Q02818 461 aa8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 SLC4A10Q6U841 1118 aa8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 ZSCAN30Q86W11 494 aa8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 CRB1P82279 1406 aa8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 RAB3GAP1Q15042 981 aa8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 CCDC30Q5VVM6 783 aa8.52□□□□□ -1.05
SRGAP3-213ENST00000618999 DNTTIP2Q5QJE6 756 aaKnown RBP8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 HDGFL1Q5TGJ6 251 aa8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 ZCRB1Q8TBF4 217 aaKnown RBP8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 XIRP1Q702N8 1843 aaKnown RBP8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 KCNQ3O43525 872 aa8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 IL2RBP14784 551 aa8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 RABEP1Q15276 862 aa8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 CAVIN1Q6NZI2 390 aaKnown RBP8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 NFATC2IPQ8NCF5 419 aa8.51□□□□□ -1.05
SRGAP3-213ENST00000618999 PHKG2P15735 406 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 CABP4P57796 275 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 DHX37Q8IY37 1157 aaKnown RBP8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 MARF1Q9Y4F3 1742 aaKnown RBP8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 SSFA2P28290 1259 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 SLC39A6Q13433 755 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 FKBP5Q13451 457 aaPredicted RBP8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 TTC5Q8N0Z6 440 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 ZBTB40Q9NUA8 1239 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 E2F4Q16254 413 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 CARD10Q9BWT7 1032 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 BABAM1Q9NWV8 329 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 ALS2Q96Q42 1657 aa8.5□□□□□ -1.05
SRGAP3-213ENST00000618999 GPIHBP1Q8IV16 184 aa8.49□□□□□ -1.05
SRGAP3-213ENST00000618999 RETREG2Q8NC44 543 aa8.49□□□□□ -1.05
SRGAP3-213ENST00000618999 ARHGAP45Q92619 1136 aa8.49□□□□□ -1.05
SRGAP3-213ENST00000618999 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.49□□□□□ -1.05
SRGAP3-213ENST00000618999 RGPD1P0DJD0 1748 aa8.49□□□□□ -1.05
SRGAP3-213ENST00000618999 KLHL40Q2TBA0 621 aa8.49□□□□□ -1.05
SRGAP3-213ENST00000618999 INTS3Q68E01 1043 aaKnown RBP8.49□□□□□ -1.05
SRGAP3-213ENST00000618999 TBC1D9Q6ZT07 1266 aa8.49□□□□□ -1.05
SRGAP3-213ENST00000618999 FAM13BQ9NYF5 915 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms