RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 PPRC1Q5VV67 1664 aaKnown RBP16.65■□□□□ 0.26
CIITA-213ENST00000618327 C8orf37Q96NL8 207 aa16.65■□□□□ 0.26
CIITA-213ENST00000618327 TRIM34Q9BYJ4 488 aa16.65■□□□□ 0.26
CIITA-213ENST00000618327 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.65■□□□□ 0.26
CIITA-213ENST00000618327 MADDQ8WXG6 1647 aa16.65■□□□□ 0.26
CIITA-213ENST00000618327 AKAP2Q9Y2D5 859 aa16.65■□□□□ 0.26
CIITA-213ENST00000618327 USP6P35125 1406 aa16.65■□□□□ 0.26
CIITA-213ENST00000618327 PCDH11XQ9BZA7 1347 aa16.65■□□□□ 0.26
CIITA-213ENST00000618327 PCDH11YQ9BZA8 1340 aa16.65■□□□□ 0.26
CIITA-213ENST00000618327 ANKRD44Q8N8A2 993 aa16.64■□□□□ 0.26
CIITA-213ENST00000618327 KIDINS220Q9ULH0 1771 aa16.64■□□□□ 0.25
CIITA-213ENST00000618327 CAMSAP1Q5T5Y3 1602 aa16.64■□□□□ 0.25
CIITA-213ENST00000618327 ALDH1L1O75891 902 aa16.64■□□□□ 0.25
CIITA-213ENST00000618327 ZSCAN25Q6NSZ9 544 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 RASSF8Q8NHQ8 419 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 CCDC8Q9H0W5 538 aaPredicted RBP16.63■□□□□ 0.25
CIITA-213ENST00000618327 ABCA6Q8N139 1617 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 ALKQ9UM73 1620 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 BOLA2Q9H3K6 86 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 CYP46A1Q9Y6A2 500 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 NUCB1Q02818 461 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 KLHL34Q8N239 644 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 LGR6Q9HBX8 967 aa16.63■□□□□ 0.25
CIITA-213ENST00000618327 GLI2P10070 1586 aa16.62■□□□□ 0.25
CIITA-213ENST00000618327 BMP2KLQ5H9B9 411 aa16.62■□□□□ 0.25
CIITA-213ENST00000618327 ACSBG1Q96GR2 724 aa16.62■□□□□ 0.25
CIITA-213ENST00000618327 KAT6BQ8WYB5 2073 aa16.62■□□□□ 0.25
CIITA-213ENST00000618327 VSIG10Q8N0Z9 540 aa16.62■□□□□ 0.25
CIITA-213ENST00000618327 ZBTB40Q9NUA8 1239 aa16.62■□□□□ 0.25
CIITA-213ENST00000618327 PIP4K2AP48426 406 aaPredicted RBP16.62■□□□□ 0.25
CIITA-213ENST00000618327 NFKBIBQ15653 356 aa16.61■□□□□ 0.25
CIITA-213ENST00000618327 JARID2Q92833 1246 aaPredicted RBP16.61■□□□□ 0.25
CIITA-213ENST00000618327 BCORL1Q5H9F3 1711 aa16.61■□□□□ 0.25
CIITA-213ENST00000618327 GRM8O00222 908 aa16.61■□□□□ 0.25
CIITA-213ENST00000618327 LINS1Q8NG48 757 aa16.61■□□□□ 0.25
CIITA-213ENST00000618327 K7ELQ4 463 aaPredicted RBP16.6■□□□□ 0.25
CIITA-213ENST00000618327 RAD21O60216 631 aa16.6■□□□□ 0.25
CIITA-213ENST00000618327 ZNF790Q6PG37 636 aa16.6■□□□□ 0.25
CIITA-213ENST00000618327 ANKRD18BA2A2Z9 1011 aa16.6■□□□□ 0.25
CIITA-213ENST00000618327 SART3Q15020 963 aaKnown RBP16.6■□□□□ 0.25
CIITA-213ENST00000618327 PLEKHF1Q96S99 279 aa16.6■□□□□ 0.25
CIITA-213ENST00000618327 PHAXQ9H814 394 aaKnown RBP16.6■□□□□ 0.25
CIITA-213ENST00000618327 ATP8B2P98198 1209 aa16.6■□□□□ 0.25
CIITA-213ENST00000618327 GSE1Q14687 1217 aa16.59■□□□□ 0.25
CIITA-213ENST00000618327 ECHDC1Q9NTX5 307 aa16.59■□□□□ 0.25
CIITA-213ENST00000618327 G2E3Q7L622 706 aa16.59■□□□□ 0.25
CIITA-213ENST00000618327 RHPN1Q8TCX5 695 aa16.59■□□□□ 0.25
CIITA-213ENST00000618327 HOXB7P09629 217 aa16.58■□□□□ 0.25
CIITA-213ENST00000618327 NACAP1Q9BZK3 213 aa16.58■□□□□ 0.25
CIITA-213ENST00000618327 AGLP35573 1532 aa16.58■□□□□ 0.25
CIITA-213ENST00000618327 IDH1O75874 414 aaKnown RBP16.58■□□□□ 0.25
CIITA-213ENST00000618327 IFIT1P09914 478 aaKnown RBP16.58■□□□□ 0.25
CIITA-213ENST00000618327 FOSBP53539 338 aa16.58■□□□□ 0.25
CIITA-213ENST00000618327 DDX21Q9NR30 783 aaKnown RBP eCLIP16.58■□□□□ 0.25
CIITA-213ENST00000618327 ATP6V1AP38606 617 aa16.58■□□□□ 0.24
CIITA-213ENST00000618327 TPM4P67936 248 aa16.58■□□□□ 0.24
CIITA-213ENST00000618327 SMARCC1Q92922 1105 aaPredicted RBP16.58■□□□□ 0.24
CIITA-213ENST00000618327 DHX16O60231 1041 aaKnown RBP16.57■□□□□ 0.24
CIITA-213ENST00000618327 MARCH6O60337 910 aa16.57■□□□□ 0.24
CIITA-213ENST00000618327 BLOC1S2Q6QNY1 142 aa16.57■□□□□ 0.24
CIITA-213ENST00000618327 CLTCQ00610 1675 aaKnown RBP16.57■□□□□ 0.24
CIITA-213ENST00000618327 ANKRD1Q15327 319 aa16.57■□□□□ 0.24
CIITA-213ENST00000618327 RRP12Q5JTH9 1297 aaKnown RBP16.57■□□□□ 0.24
CIITA-213ENST00000618327 RNF123Q5XPI4 1314 aa16.57■□□□□ 0.24
CIITA-213ENST00000618327 TTC22Q5TAA0 569 aa16.57■□□□□ 0.24
CIITA-213ENST00000618327 SETBP1Q9Y6X0 1596 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 CEP85Q6P2H3 762 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 LDHAL6AQ6ZMR3 332 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 JAKMIP1Q96N16 626 aaKnown RBP16.56■□□□□ 0.24
CIITA-213ENST00000618327 LRP2BPQ9P2M1 347 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 ZBTB7BO15156 539 aaPredicted RBP16.56■□□□□ 0.24
CIITA-213ENST00000618327 PDCP20941 246 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 SLC52A2Q9HAB3 445 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 CTNNA3Q9UI47 895 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 DIP2BQ9P265 1576 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 SAFBQ15424 915 aaKnown RBP eCLIP16.56■□□□□ 0.24
CIITA-213ENST00000618327 CWF19L2Q2TBE0 894 aaKnown RBP16.56■□□□□ 0.24
CIITA-213ENST00000618327 TSHZ3Q63HK5 1081 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 TBC1D9Q6ZT07 1266 aa16.56■□□□□ 0.24
CIITA-213ENST00000618327 SLC3A2P08195 630 aaKnown RBP16.55■□□□□ 0.24
CIITA-213ENST00000618327 ARHGEF25Q86VW2 580 aa16.55■□□□□ 0.24
CIITA-213ENST00000618327 BICD2Q8TD16 824 aa16.55■□□□□ 0.24
CIITA-213ENST00000618327 CDCA7Q9BWT1 371 aaPredicted RBP16.55■□□□□ 0.24
CIITA-213ENST00000618327 DCTPP1Q9H773 170 aa16.55■□□□□ 0.24
CIITA-213ENST00000618327 CWC22Q9HCG8 908 aaKnown RBP16.55■□□□□ 0.24
CIITA-213ENST00000618327 RAI14Q9P0K7 980 aa16.55■□□□□ 0.24
CIITA-213ENST00000618327 KRT32Q14532 448 aa16.55■□□□□ 0.24
CIITA-213ENST00000618327 AK7Q96M32 723 aa16.54■□□□□ 0.24
CIITA-213ENST00000618327 SMC5Q8IY18 1101 aa16.54■□□□□ 0.24
CIITA-213ENST00000618327 IL17REQ8NFR9 667 aa16.54■□□□□ 0.24
CIITA-213ENST00000618327 ABCF2Q9UG63 623 aa16.54■□□□□ 0.24
CIITA-213ENST00000618327 ANKARQ7Z5J8 1434 aa16.54■□□□□ 0.24
CIITA-213ENST00000618327 LMBR1LQ6UX01 489 aa16.54■□□□□ 0.24
CIITA-213ENST00000618327 EVI5LQ96CN4 794 aa16.54■□□□□ 0.24
CIITA-213ENST00000618327 PDRG1Q9NUG6 133 aa16.54■□□□□ 0.24
CIITA-213ENST00000618327 KIAA0232Q92628 1395 aa16.53■□□□□ 0.24
CIITA-213ENST00000618327 IGSF1Q8N6C5 1336 aa16.53■□□□□ 0.24
CIITA-213ENST00000618327 PDE1AP54750 535 aa16.52■□□□□ 0.24
CIITA-213ENST00000618327 CAVIN4Q5BKX8 364 aa16.52■□□□□ 0.24
CIITA-213ENST00000618327 VPS53Q5VIR6 699 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms