RNA–Protein interactions for RNA: ENST00000613988.4

CBWD1-223, Transcript of COBW domain containing 1, human

TSL 2

Gene CBWD1, Length 1,381 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBWD1-223	ENST00000613988	ZBTB1	Q9Y2K1	713 aa		29.04	■■■□□ 2.24
CBWD1-223	ENST00000613988	STARD3NL	O95772	234 aa		29.02	■■■□□ 2.24
CBWD1-223	ENST00000613988	U2AF1L5	P0DN76	240 aa	Predicted RBP	29.02	■■■□□ 2.24
CBWD1-223	ENST00000613988	TM4SF1	P30408	202 aa		29.02	■■■□□ 2.24
CBWD1-223	ENST00000613988	U2AF1	Q01081	240 aa	Known RBP eCLIP	29.02	■■■□□ 2.24
CBWD1-223	ENST00000613988	DDX10	Q13206	875 aa	Known RBP	29.02	■■■□□ 2.24
CBWD1-223	ENST00000613988	ZNF790	Q6PG37	636 aa		29.02	■■■□□ 2.24
CBWD1-223	ENST00000613988	NARF	Q9UHQ1	456 aa		29.02	■■■□□ 2.24
CBWD1-223	ENST00000613988	UBR2	Q8IWV8	1755 aa		29.02	■■■□□ 2.24
CBWD1-223	ENST00000613988	COL15A1	P39059	1388 aa		29.01	■■■□□ 2.23
CBWD1-223	ENST00000613988	CANX	P27824	592 aa	Known RBP	29.01	■■■□□ 2.23
CBWD1-223	ENST00000613988	ZNF496	Q96IT1	587 aa	Predicted RBP	29.01	■■■□□ 2.23
CBWD1-223	ENST00000613988	POLRMT	O00411	1230 aa	Known RBP	29	■■■□□ 2.23
CBWD1-223	ENST00000613988	FCHSD2	O94868	740 aa		29	■■■□□ 2.23
CBWD1-223	ENST00000613988	GPBP1L1	Q9HC44	474 aa	Predicted RBP	29	■■■□□ 2.23
CBWD1-223	ENST00000613988	ADCY9	O60503	1353 aa		28.99	■■■□□ 2.23
CBWD1-223	ENST00000613988	TEX13A	Q9BXU3	409 aa	Predicted RBP	28.99	■■■□□ 2.23
CBWD1-223	ENST00000613988	SENP3-EIF4A1	A0A087X0R7	540 aa		28.98	■■■□□ 2.23
CBWD1-223	ENST00000613988	KCNA3	P22001	575 aa		28.98	■■■□□ 2.23
CBWD1-223	ENST00000613988	ZNF526	Q8TF50	670 aa	Predicted RBP	28.98	■■■□□ 2.23
CBWD1-223	ENST00000613988	ARHGAP27	Q6ZUM4	889 aa		28.97	■■■□□ 2.23
CBWD1-223	ENST00000613988	PIM2	Q9P1W9	311 aa		28.97	■■■□□ 2.23
CBWD1-223	ENST00000613988	CEMIP	Q8WUJ3	1361 aa		28.97	■■■□□ 2.23
CBWD1-223	ENST00000613988	HEG1	Q9ULI3	1381 aa		28.97	■■■□□ 2.23
CBWD1-223	ENST00000613988	SIPA1L3	O60292	1781 aa	Predicted RBP	28.97	■■■□□ 2.23
CBWD1-223	ENST00000613988	BTBD11	A6QL63	1104 aa		28.96	■■■□□ 2.23
CBWD1-223	ENST00000613988	FMNL2	Q96PY5	1086 aa		28.96	■■■□□ 2.23
CBWD1-223	ENST00000613988	NFIX	Q14938	502 aa		28.95	■■■□□ 2.22
CBWD1-223	ENST00000613988	EIF5	P55010	431 aa	Known RBP	28.94	■■■□□ 2.22
CBWD1-223	ENST00000613988	RTF1	Q92541	710 aa	Known RBP	28.94	■■■□□ 2.22
CBWD1-223	ENST00000613988	BCL2L12	Q9HB09	334 aa		28.94	■■■□□ 2.22
CBWD1-223	ENST00000613988	BRCA1	P38398	1863 aa	Known RBP	28.94	■■■□□ 2.22
CBWD1-223	ENST00000613988		A0A087WZG4	1122 aa		28.93	■■■□□ 2.22
CBWD1-223	ENST00000613988	DALRD3	Q5D0E6	543 aa	Known RBP	28.92	■■■□□ 2.22
CBWD1-223	ENST00000613988	CHRNA5	P30532	468 aa		28.91	■■■□□ 2.22
CBWD1-223	ENST00000613988	KCNQ3	O43525	872 aa		28.9	■■■□□ 2.22
CBWD1-223	ENST00000613988	MCM10	Q7L590	875 aa		28.9	■■■□□ 2.22
CBWD1-223	ENST00000613988	ZNF330	Q9Y3S2	320 aa	Predicted RBP	28.9	■■■□□ 2.22
CBWD1-223	ENST00000613988	SERPINB2	P05120	415 aa		28.89	■■■□□ 2.22
CBWD1-223	ENST00000613988	IL6ST	P40189	918 aa	Predicted RBP	28.88	■■■□□ 2.21
CBWD1-223	ENST00000613988	NPM2	Q86SE8	214 aa	Known RBP	28.88	■■■□□ 2.21
CBWD1-223	ENST00000613988	AFDN	P55196	1824 aa	Known RBP	28.87	■■■□□ 2.21
CBWD1-223	ENST00000613988	ARFGEF1	Q9Y6D6	1849 aa		28.87	■■■□□ 2.21
CBWD1-223	ENST00000613988	A1BG	P04217	495 aa		28.87	■■■□□ 2.21
CBWD1-223	ENST00000613988	BICDL1	Q6ZP65	573 aa		28.87	■■■□□ 2.21
CBWD1-223	ENST00000613988	HTATSF1	O43719	755 aa	Known RBP	28.86	■■■□□ 2.21
CBWD1-223	ENST00000613988	TBC1D2B	Q9UPU7	963 aa		28.86	■■■□□ 2.21
CBWD1-223	ENST00000613988	NEFM	P07197	916 aa		28.85	■■■□□ 2.21
CBWD1-223	ENST00000613988	DCTN1	Q14203	1278 aa		28.85	■■■□□ 2.21
CBWD1-223	ENST00000613988	NRXN2	Q9P2S2	1712 aa		28.83	■■■□□ 2.21
CBWD1-223	ENST00000613988	USP16	Q9Y5T5	823 aa		28.83	■■■□□ 2.21
CBWD1-223	ENST00000613988	TBC1D9B	Q66K14	1250 aa		28.82	■■■□□ 2.2
CBWD1-223	ENST00000613988	MIER1	Q8N108	512 aa		28.82	■■■□□ 2.2
CBWD1-223	ENST00000613988	SNRPA1	P09661	255 aa	Known RBP	28.8	■■■□□ 2.2
CBWD1-223	ENST00000613988	C9orf131	Q5VYM1	1079 aa		28.8	■■■□□ 2.2
CBWD1-223	ENST00000613988	PRAMEF22	A3QJZ6	481 aa		28.79	■■■□□ 2.2
CBWD1-223	ENST00000613988	TAF7	Q15545	349 aa	Predicted RBP	28.79	■■■□□ 2.2
CBWD1-223	ENST00000613988	C2CD5	Q86YS7	1000 aa		28.78	■■■□□ 2.2
CBWD1-223	ENST00000613988		H0YIN7	160 aa		28.77	■■■□□ 2.2
CBWD1-223	ENST00000613988	KIF3C	O14782	793 aa		28.77	■■■□□ 2.2
CBWD1-223	ENST00000613988	PIP4K2A	P48426	406 aa	Predicted RBP	28.76	■■■□□ 2.2
CBWD1-223	ENST00000613988	DZIP3	Q86Y13	1208 aa	Known RBP	28.76	■■■□□ 2.2
CBWD1-223	ENST00000613988	SCN7A	Q01118	1682 aa		28.76	■■■□□ 2.19
CBWD1-223	ENST00000613988	CARMIL3	Q8ND23	1372 aa		28.76	■■■□□ 2.19
CBWD1-223	ENST00000613988	CAMTA2	O94983	1202 aa		28.75	■■■□□ 2.19
CBWD1-223	ENST00000613988	TTLL6	Q8N841	843 aa		28.75	■■■□□ 2.19
CBWD1-223	ENST00000613988	SETDB2	Q96T68	719 aa		28.75	■■■□□ 2.19
CBWD1-223	ENST00000613988	ANP32C	O43423	234 aa		28.75	■■■□□ 2.19
CBWD1-223	ENST00000613988	PLEKHF1	Q96S99	279 aa		28.75	■■■□□ 2.19
CBWD1-223	ENST00000613988	PNN	Q9H307	717 aa	Known RBP	28.75	■■■□□ 2.19
CBWD1-223	ENST00000613988	MIS18A	Q9NYP9	233 aa		28.75	■■■□□ 2.19
CBWD1-223	ENST00000613988	RNF181	Q9P0P0	153 aa		28.75	■■■□□ 2.19
CBWD1-223	ENST00000613988	PDE6B	P35913	854 aa		28.73	■■■□□ 2.19
CBWD1-223	ENST00000613988	PRR5L	Q6MZQ0	368 aa		28.73	■■■□□ 2.19
CBWD1-223	ENST00000613988	BRIP1	Q9BX63	1249 aa		28.73	■■■□□ 2.19
CBWD1-223	ENST00000613988	CEP350	Q5VT06	3117 aa		28.73	■■■□□ 2.19
CBWD1-223	ENST00000613988	NPHP1	O15259	732 aa		28.72	■■■□□ 2.19
CBWD1-223	ENST00000613988	CCDC24	Q8N4L8	307 aa		28.72	■■■□□ 2.19
CBWD1-223	ENST00000613988	DLEC1	Q9Y238	1755 aa		28.71	■■■□□ 2.19
CBWD1-223	ENST00000613988	DLG5	Q8TDM6	1919 aa		28.71	■■■□□ 2.19
CBWD1-223	ENST00000613988	NFE2L2	Q16236	605 aa		28.71	■■■□□ 2.19
CBWD1-223	ENST00000613988	PNISR	Q8TF01	805 aa	Known RBP	28.71	■■■□□ 2.19
CBWD1-223	ENST00000613988	PDZRN3	Q9UPQ7	1066 aa		28.71	■■■□□ 2.19
CBWD1-223	ENST00000613988	RALBP1	Q15311	655 aa		28.7	■■■□□ 2.18
CBWD1-223	ENST00000613988	ZNF622	Q969S3	477 aa	Known RBP eCLIP	28.7	■■■□□ 2.18
CBWD1-223	ENST00000613988	MAPK8IP3	Q9UPT6	1336 aa		28.7	■■■□□ 2.18
CBWD1-223	ENST00000613988	CLEC4G	Q6UXB4	293 aa		28.69	■■■□□ 2.18
CBWD1-223	ENST00000613988	CNBD1	Q8NA66	436 aa		28.69	■■■□□ 2.18
CBWD1-223	ENST00000613988	NMRK2	Q9NPI5	230 aa		28.69	■■■□□ 2.18
CBWD1-223	ENST00000613988	SBF1	O95248	1867 aa		28.68	■■■□□ 2.18
CBWD1-223	ENST00000613988	NBPF26	B4DH59	902 aa		28.68	■■■□□ 2.18
CBWD1-223	ENST00000613988	HSPA6	P17066	643 aa		28.68	■■■□□ 2.18
CBWD1-223	ENST00000613988	RASSF7	Q02833	373 aa		28.68	■■■□□ 2.18
CBWD1-223	ENST00000613988	NBPF10	Q6P3W6	841 aa	Known RBP	28.68	■■■□□ 2.18
CBWD1-223	ENST00000613988	NBPF15	Q8N660	670 aa		28.68	■■■□□ 2.18
CBWD1-223	ENST00000613988	ZNF652	Q9Y2D9	606 aa		28.68	■■■□□ 2.18
CBWD1-223	ENST00000613988	BCOR	Q6W2J9	1755 aa		28.67	■■■□□ 2.18
CBWD1-223	ENST00000613988	ANKRD31	Q8N7Z5	1873 aa		28.67	■■■□□ 2.18
CBWD1-223	ENST00000613988	ST5	P78524	1137 aa		28.66	■■■□□ 2.18
CBWD1-223	ENST00000613988	TOMM70	O94826	608 aa		28.65	■■■□□ 2.18

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms