RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 A0A087WZG4 1122 aa16.21■□□□□ 0.19
GGA3-220ENST00000613421 INSRP06213 1382 aa16.21■□□□□ 0.19
GGA3-220ENST00000613421 TSPYL6Q8N831 410 aa16.21■□□□□ 0.19
GGA3-220ENST00000613421 SMARCE1Q969G3 411 aa16.21■□□□□ 0.19
GGA3-220ENST00000613421 UBAC1Q9BSL1 405 aa16.21■□□□□ 0.19
GGA3-220ENST00000613421 ZBTB40Q9NUA8 1239 aa16.21■□□□□ 0.19
GGA3-220ENST00000613421 SPATA31E1Q6ZUB1 1445 aa16.21■□□□□ 0.19
GGA3-220ENST00000613421 YTHDC2Q9H6S0 1430 aaKnown RBP16.21■□□□□ 0.19
GGA3-220ENST00000613421 NAP1L1P55209 391 aaKnown RBP16.21■□□□□ 0.18
GGA3-220ENST00000613421 KRT28Q7Z3Y7 464 aa16.21■□□□□ 0.18
GGA3-220ENST00000613421 RHPN1Q8TCX5 695 aa16.21■□□□□ 0.18
GGA3-220ENST00000613421 BLMP54132 1417 aaPredicted RBP16.2■□□□□ 0.18
GGA3-220ENST00000613421 HMGB1P09429 215 aaKnown RBP16.2■□□□□ 0.18
GGA3-220ENST00000613421 PDE1AP54750 535 aa16.2■□□□□ 0.18
GGA3-220ENST00000613421 RBM10P98175 930 aaKnown RBP16.2■□□□□ 0.18
GGA3-220ENST00000613421 CAMK4Q16566 473 aa16.2■□□□□ 0.18
GGA3-220ENST00000613421 CEP170Q5SW79 1584 aa16.2■□□□□ 0.18
GGA3-220ENST00000613421 RNF123Q5XPI4 1314 aa16.2■□□□□ 0.18
GGA3-220ENST00000613421 IGHMBP2P38935 993 aaKnown RBP16.2■□□□□ 0.18
GGA3-220ENST00000613421 SMC5Q8IY18 1101 aa16.2■□□□□ 0.18
GGA3-220ENST00000613421 ANKRD24Q8TF21 1146 aa16.2■□□□□ 0.18
GGA3-220ENST00000613421 PHACTR3Q96KR7 559 aa16.2■□□□□ 0.18
GGA3-220ENST00000613421 LRP2BPQ9P2M1 347 aa16.2■□□□□ 0.18
GGA3-220ENST00000613421 CCDC43Q96MW1 224 aaKnown RBP16.19■□□□□ 0.18
GGA3-220ENST00000613421 ANXA1P04083 346 aa16.19■□□□□ 0.18
GGA3-220ENST00000613421 BRPF1P55201 1214 aaPredicted RBP16.19■□□□□ 0.18
GGA3-220ENST00000613421 IFNL2Q8IZJ0 200 aa16.19■□□□□ 0.18
GGA3-220ENST00000613421 WASF1Q92558 559 aa16.19■□□□□ 0.18
GGA3-220ENST00000613421 RAI14Q9P0K7 980 aa16.19■□□□□ 0.18
GGA3-220ENST00000613421 NOL7Q9UMY1 257 aaKnown RBP16.19■□□□□ 0.18
GGA3-220ENST00000613421 ACBD3Q9H3P7 528 aa16.19■□□□□ 0.18
GGA3-220ENST00000613421 SNX21Q969T3 373 aa16.19■□□□□ 0.18
GGA3-220ENST00000613421 MAGEC2Q9UBF1 373 aaPredicted RBP16.19■□□□□ 0.18
GGA3-220ENST00000613421 KLHL40Q2TBA0 621 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 TTLL5Q6EMB2 1281 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 CBFA2T2O43439 604 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 CDK5RAP3Q96JB5 506 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 LARP6Q9BRS8 491 aaKnown RBP16.18■□□□□ 0.18
GGA3-220ENST00000613421 CHPF2Q9P2E5 772 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 FLT4P35916 1363 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 UQCRHLA0A096LP55 91 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 UQCRHP07919 91 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 CCDC112Q8NEF3 446 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 EPS15P42566 896 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 IFIT5Q13325 482 aaKnown RBP16.18■□□□□ 0.18
GGA3-220ENST00000613421 ARHGEF5Q12774 1597 aa16.18■□□□□ 0.18
GGA3-220ENST00000613421 STX6O43752 255 aa16.17■□□□□ 0.18
GGA3-220ENST00000613421 MTHFSDQ2M296 383 aaKnown RBP16.17■□□□□ 0.18
GGA3-220ENST00000613421 NUTM2BA6NNL0 878 aaPredicted RBP16.17■□□□□ 0.18
GGA3-220ENST00000613421 NUTM2EB1AL46 878 aaPredicted RBP16.17■□□□□ 0.18
GGA3-220ENST00000613421 ATP8B2P98198 1209 aa16.17■□□□□ 0.18
GGA3-220ENST00000613421 NCBP3Q53F19 620 aaKnown RBP16.17■□□□□ 0.18
GGA3-220ENST00000613421 SAMD1Q6SPF0 538 aaPredicted RBP16.17■□□□□ 0.18
GGA3-220ENST00000613421 NUTM2AQ8IVF1 878 aaPredicted RBP16.17■□□□□ 0.18
GGA3-220ENST00000613421 TARBP1Q13395 1621 aaKnown RBP16.17■□□□□ 0.18
GGA3-220ENST00000613421 GJB2P29033 226 aa16.17■□□□□ 0.18
GGA3-220ENST00000613421 DCTPP1Q9H773 170 aa16.17■□□□□ 0.18
GGA3-220ENST00000613421 IKQ13123 557 aaPredicted RBP16.17■□□□□ 0.18
GGA3-220ENST00000613421 TMX3Q96JJ7 454 aa16.17■□□□□ 0.18
GGA3-220ENST00000613421 GDPD2Q9HCC8 539 aa16.17■□□□□ 0.18
GGA3-220ENST00000613421 FILIP1Q7Z7B0 1213 aa16.16■□□□□ 0.18
GGA3-220ENST00000613421 HSP90B2PQ58FF3 399 aa16.16■□□□□ 0.18
GGA3-220ENST00000613421 C16orf71Q8IYS4 520 aaPredicted RBP16.16■□□□□ 0.18
GGA3-220ENST00000613421 ESYT1Q9BSJ8 1104 aa16.16■□□□□ 0.18
GGA3-220ENST00000613421 OFD1O75665 1012 aa16.16■□□□□ 0.18
GGA3-220ENST00000613421 CEP85Q6P2H3 762 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 UBE3BQ7Z3V4 1068 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 PPFIBP1Q86W92 1011 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 KDM2BQ8NHM5 1336 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 SMTNL1A8MU46 457 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 CAGE1Q8TC20 777 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 ZBTB3Q9H5J0 574 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 KDM6BO15054 1643 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 RUFY1Q96T51 708 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 HSP90AB3PQ58FF7 597 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 ABCF2Q9UG63 623 aa16.15■□□□□ 0.18
GGA3-220ENST00000613421 SEC24BO95487 1268 aa16.14■□□□□ 0.17
GGA3-220ENST00000613421 ANAPC15P60006 121 aa16.14■□□□□ 0.17
GGA3-220ENST00000613421 C8orf76Q96K31 380 aa16.14■□□□□ 0.17
GGA3-220ENST00000613421 ATP5J2-PTCD1G3V325 749 aa16.14■□□□□ 0.17
GGA3-220ENST00000613421 SNRPA1P09661 255 aaKnown RBP16.14■□□□□ 0.17
GGA3-220ENST00000613421 KRT24Q2M2I5 525 aa16.14■□□□□ 0.17
GGA3-220ENST00000613421 HMG20BQ9P0W2 317 aa16.14■□□□□ 0.17
GGA3-220ENST00000613421 STIM1Q13586 685 aa16.14■□□□□ 0.17
GGA3-220ENST00000613421 CWC25Q9NXE8 425 aaPredicted RBP16.14■□□□□ 0.17
GGA3-220ENST00000613421 GOLIM4O00461 696 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 AKAP4Q5JQC9 854 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 NAPBQ9H115 298 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 DMRT2Q9Y5R5 561 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 ALDH1L1O75891 902 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 AK7Q96M32 723 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 PTPRTO14522 1441 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 ZNF213O14771 459 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 ANO10Q9NW15 660 aa16.13■□□□□ 0.17
GGA3-220ENST00000613421 TRMT112Q9UI30 125 aaKnown RBP16.13■□□□□ 0.17
GGA3-220ENST00000613421 ANKRD13DQ6ZTN6 518 aa16.12■□□□□ 0.17
GGA3-220ENST00000613421 RBM27Q9P2N5 1060 aaKnown RBP16.12■□□□□ 0.17
GGA3-220ENST00000613421 GUCY1B3Q02153 619 aa16.12■□□□□ 0.17
GGA3-220ENST00000613421 SOGA3Q5TF21 947 aa16.12■□□□□ 0.17
GGA3-220ENST00000613421 BICDL1Q6ZP65 573 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms