RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 PHLDB2Q86SQ0 1253 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 VAV2P52735 878 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 BCL2L13Q9BXK5 485 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 VCX3BQ9H321 246 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.11□□□□□ -0.79
TTC28-208ENST00000612946 MAP3K1Q13233 1512 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 AFAP1L1Q8TED9 768 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 ANKRD62A6NC57 917 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 ATP5DP30049 168 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 RIPK4P57078 832 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 CCDC57Q2TAC2 916 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 FEZ2Q9UHY8 353 aaPredicted RBP10.11□□□□□ -0.79
TTC28-208ENST00000612946 BMP2KLQ5H9B9 411 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 TRIM7Q9C029 511 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 ALDH3A1P30838 453 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 SLMAPQ14BN4 828 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 CCDC158Q5M9N0 1113 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 FAM177A1Q8N128 213 aaPredicted RBP10.11□□□□□ -0.79
TTC28-208ENST00000612946 FSD1Q9BTV5 496 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 GIGYF1O75420 1035 aaPredicted RBP10.11□□□□□ -0.79
TTC28-208ENST00000612946 GOLGA5Q8TBA6 731 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 BMP2KQ9NSY1 1161 aaPredicted RBP10.11□□□□□ -0.79
TTC28-208ENST00000612946 PDRG1Q9NUG6 133 aa10.11□□□□□ -0.79
TTC28-208ENST00000612946 BLOC1S2Q6QNY1 142 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 DAPK1P53355 1430 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 SMC6Q96SB8 1091 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 SCLT1Q96NL6 688 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 RAD50Q92878 1312 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 SPAG1Q07617 926 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 SETDB1Q15047 1291 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 KRBA2Q6ZNG9 492 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 COG3Q96JB2 828 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 TSGA10Q9BZW7 698 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 ZFYVE27Q5T4F4 411 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 CACNA2D4Q7Z3S7 1137 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 RABGAP1Q9Y3P9 1069 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 MAATS1Q7Z4T9 603 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 TRERF1Q96PN7 1200 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.1□□□□□ -0.79
TTC28-208ENST00000612946 THEGQ9P2T0 379 aa10.1□□□□□ -0.79
TTC28-208ENST00000612946 CASKIN1Q8WXD9 1431 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 ATF7IPQ6VMQ6 1270 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 ARHGAP24Q8N264 748 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 CCDC77Q9BR77 488 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 LARSQ9P2J5 1176 aaKnown RBP10.09□□□□□ -0.79
TTC28-208ENST00000612946 RLBP1P12271 317 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 ZNF165P49910 485 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 MED4Q9NPJ6 270 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 MX1P20591 662 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 PIBF1Q8WXW3 757 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 ZSCAN16Q9H4T2 348 aaPredicted RBP10.09□□□□□ -0.79
TTC28-208ENST00000612946 SKILP12757 684 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 PPFIA1Q13136 1202 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 RAI14Q9P0K7 980 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 RRP7AQ9Y3A4 280 aaKnown RBP10.09□□□□□ -0.79
TTC28-208ENST00000612946 ZNF853P0CG23 659 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 CLUL1Q15846 466 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 RPAINQ86UA6 219 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 JAKMIP2Q96AA8 810 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 EIF2AK4Q9P2K8 1649 aaKnown RBP10.09□□□□□ -0.79
TTC28-208ENST00000612946 BRPF1P55201 1214 aaPredicted RBP10.09□□□□□ -0.79
TTC28-208ENST00000612946 SPECC1Q5M775 1068 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 LRRC45Q96CN5 670 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 DNAI2Q9GZS0 605 aa10.09□□□□□ -0.79
TTC28-208ENST00000612946 ANAPC15P60006 121 aa10.08□□□□□ -0.8
TTC28-208ENST00000612946 GNG11P61952 73 aa10.08□□□□□ -0.8
TTC28-208ENST00000612946 ZKSCAN8Q15776 578 aaPredicted RBP10.08□□□□□ -0.8
TTC28-208ENST00000612946 BCL11BQ9C0K0 894 aaPredicted RBP10.08□□□□□ -0.8
TTC28-208ENST00000612946 PDS5BQ9NTI5 1447 aa10.08□□□□□ -0.8
TTC28-208ENST00000612946 RPGRIP1Q96KN7 1286 aa10.08□□□□□ -0.8
TTC28-208ENST00000612946 FAM114A2Q9NRY5 505 aa10.08□□□□□ -0.8
TTC28-208ENST00000612946 HNRNPMP52272 730 aaKnown RBP eCLIP10.08□□□□□ -0.8
TTC28-208ENST00000612946 CCDC12Q8WUD4 166 aaPredicted RBP10.08□□□□□ -0.8
TTC28-208ENST00000612946 TBC1D2BQ9UPU7 963 aa10.08□□□□□ -0.8
TTC28-208ENST00000612946 STMN2Q93045 179 aa10.08□□□□□ -0.8
TTC28-208ENST00000612946 LIMCH1Q9UPQ0 1083 aa10.08□□□□□ -0.8
TTC28-208ENST00000612946 ZNF500O60304 480 aaPredicted RBP10.08□□□□□ -0.8
TTC28-208ENST00000612946 NUP88Q99567 741 aaPredicted RBP10.08□□□□□ -0.8
TTC28-208ENST00000612946 FKBP5Q13451 457 aaPredicted RBP10.07□□□□□ -0.8
TTC28-208ENST00000612946 DBN1Q16643 649 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 ZSCAN25Q6NSZ9 544 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 DZIP1Q86YF9 867 aaKnown RBP10.07□□□□□ -0.8
TTC28-208ENST00000612946 ATP8B1O43520 1251 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 IRX4P78413 519 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 CEP120Q8N960 986 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 ANAPC4Q9UJX5 808 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 GBP7Q8N8V2 638 aaPredicted RBP10.07□□□□□ -0.8
TTC28-208ENST00000612946 CIB2O75838 187 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 ALDH1L2Q3SY69 923 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 GSTTP1A0A1W2PQM5 241 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 RAB3GAP1Q15042 981 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 SMC5Q8IY18 1101 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 EFCAB13Q8IY85 973 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 SELENOOQ9BVL4 669 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 SEPT11Q9NVA2 429 aaKnown RBP10.07□□□□□ -0.8
TTC28-208ENST00000612946 MROH2BQ7Z745 1585 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 RAB11FIP3O75154 756 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 VPS18Q9P253 973 aa10.07□□□□□ -0.8
TTC28-208ENST00000612946 NBPF7P0C2Y1 421 aaPredicted RBP10.06□□□□□ -0.8
TTC28-208ENST00000612946 ATL3Q6DD88 541 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms