RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 MCCD1P59942 119 aaPredicted RBP8.6□□□□□ -1.03
SMCHD1-213ENST00000609587 FCHSD1Q86WN1 690 aa8.6□□□□□ -1.03
SMCHD1-213ENST00000609587 RHBDD1Q8TEB9 315 aa8.6□□□□□ -1.03
SMCHD1-213ENST00000609587 CCDC85AQ96PX6 553 aaPredicted RBP8.6□□□□□ -1.03
SMCHD1-213ENST00000609587 ZMYND15Q9H091 742 aa8.6□□□□□ -1.03
SMCHD1-213ENST00000609587 STAU1O95793 577 aaKnown RBP8.59□□□□□ -1.03
SMCHD1-213ENST00000609587 ADH6P28332 368 aa8.59□□□□□ -1.03
SMCHD1-213ENST00000609587 GATA4P43694 442 aa8.59□□□□□ -1.03
SMCHD1-213ENST00000609587 SCO2A0A1W2PP80 73 aa8.58□□□□□ -1.04
SMCHD1-213ENST00000609587 MYCP01106 439 aaPredicted RBP8.58□□□□□ -1.04
SMCHD1-213ENST00000609587 GTF2E1P29083 439 aaPredicted RBP8.58□□□□□ -1.04
SMCHD1-213ENST00000609587 ZNF592Q92610 1267 aa8.58□□□□□ -1.04
SMCHD1-213ENST00000609587 TBC1D2BQ9UPU7 963 aa8.58□□□□□ -1.04
SMCHD1-213ENST00000609587 SPATA31C1P0DKV0 1188 aa8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 UBTFP17480 764 aaKnown RBP8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 PLA2G4AP47712 749 aa8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 NKAPLQ5M9Q1 402 aa8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 FIGNL1Q6PIW4 674 aa8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 PPARGC1BQ86YN6 1023 aaKnown RBP8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 ZCCHC2Q9C0B9 1178 aaKnown RBP8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 ETNK1Q9HBU6 452 aa8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 PCDHGC4Q9Y5F7 938 aa8.57□□□□□ -1.04
SMCHD1-213ENST00000609587 DCDC2BA2VCK2 349 aa8.56□□□□□ -1.04
SMCHD1-213ENST00000609587 CD33P20138 364 aa8.56□□□□□ -1.04
SMCHD1-213ENST00000609587 TLR1Q15399 786 aa8.56□□□□□ -1.04
SMCHD1-213ENST00000609587 TBC1D9Q6ZT07 1266 aa8.56□□□□□ -1.04
SMCHD1-213ENST00000609587 PLVAPQ9BX97 442 aa8.56□□□□□ -1.04
SMCHD1-213ENST00000609587 ESCO1Q5FWF5 840 aa8.55□□□□□ -1.04
SMCHD1-213ENST00000609587 GDPD2Q9HCC8 539 aa8.55□□□□□ -1.04
SMCHD1-213ENST00000609587 TPSG1Q9NRR2 321 aa8.55□□□□□ -1.04
SMCHD1-213ENST00000609587 ATXN7O15265 892 aaPredicted RBP8.54□□□□□ -1.04
SMCHD1-213ENST00000609587 IRF5Q13568 498 aa8.54□□□□□ -1.04
SMCHD1-213ENST00000609587 FAM182BQ5T319 152 aa8.54□□□□□ -1.04
SMCHD1-213ENST00000609587 AVENQ9NQS1 362 aaPredicted RBP8.54□□□□□ -1.04
SMCHD1-213ENST00000609587 ZNF330Q9Y3S2 320 aaPredicted RBP8.54□□□□□ -1.04
SMCHD1-213ENST00000609587 SUPT5HO00267 1087 aaKnown RBP8.53□□□□□ -1.04
SMCHD1-213ENST00000609587 DYRK3O43781 588 aa8.53□□□□□ -1.04
SMCHD1-213ENST00000609587 MAPTP10636 758 aaKnown RBP8.53□□□□□ -1.04
SMCHD1-213ENST00000609587 NLRP8Q86W28 1048 aa8.53□□□□□ -1.04
SMCHD1-213ENST00000609587 COG6Q9Y2V7 657 aa8.53□□□□□ -1.04
SMCHD1-213ENST00000609587 RAD21O60216 631 aa8.52□□□□□ -1.05
SMCHD1-213ENST00000609587 TNP2Q05952 138 aa8.52□□□□□ -1.05
SMCHD1-213ENST00000609587 ARTNQ5T4W7 220 aa8.52□□□□□ -1.05
SMCHD1-213ENST00000609587 ZNF468Q5VIY5 522 aaPredicted RBP8.52□□□□□ -1.05
SMCHD1-213ENST00000609587 CLUAP1Q96AJ1 413 aa8.52□□□□□ -1.05
SMCHD1-213ENST00000609587 A6NJR5 290 aa8.51□□□□□ -1.05
SMCHD1-213ENST00000609587 PCBP4P57723 403 aaKnown RBP8.51□□□□□ -1.05
SMCHD1-213ENST00000609587 C1orf216Q8TAB5 229 aa8.51□□□□□ -1.05
SMCHD1-213ENST00000609587 ZFP64Q9NPA5 681 aa8.51□□□□□ -1.05
SMCHD1-213ENST00000609587 CEP126Q9P2H0 1117 aa8.51□□□□□ -1.05
SMCHD1-213ENST00000609587 ABL2P42684 1182 aa8.5□□□□□ -1.05
SMCHD1-213ENST00000609587 WASHC4Q2M389 1173 aa8.5□□□□□ -1.05
SMCHD1-213ENST00000609587 KHNYNO15037 678 aaKnown RBP8.49□□□□□ -1.05
SMCHD1-213ENST00000609587 SCNN1DP51172 638 aa8.49□□□□□ -1.05
SMCHD1-213ENST00000609587 ZNF295-AS1Q8N0V1 137 aa8.49□□□□□ -1.05
SMCHD1-213ENST00000609587 POM121Q96HA1 1249 aa8.49□□□□□ -1.05
SMCHD1-213ENST00000609587 MDFIQ99750 246 aa8.49□□□□□ -1.05
SMCHD1-213ENST00000609587 KRTAP9-9Q9BYP9 154 aa8.49□□□□□ -1.05
SMCHD1-213ENST00000609587 KRTAP9-4Q9BYQ2 154 aa8.49□□□□□ -1.05
SMCHD1-213ENST00000609587 A0A1W2PNR3 127 aa8.48□□□□□ -1.05
SMCHD1-213ENST00000609587 EIF4G2P78344 907 aaKnown RBP eCLIP8.48□□□□□ -1.05
SMCHD1-213ENST00000609587 TSGA10IPQ3SY00 556 aa8.48□□□□□ -1.05
SMCHD1-213ENST00000609587 KRTAP19-1Q8IUB9 90 aa8.48□□□□□ -1.05
SMCHD1-213ENST00000609587 DOLKQ9UPQ8 538 aa8.48□□□□□ -1.05
SMCHD1-213ENST00000609587 FAM157BP0CG42 384 aa8.47□□□□□ -1.05
SMCHD1-213ENST00000609587 STRN4Q9NRL3 753 aa8.47□□□□□ -1.05
SMCHD1-213ENST00000609587 FAM229AH3BQW9 127 aa8.46□□□□□ -1.06
SMCHD1-213ENST00000609587 VAC14Q08AM6 782 aa8.46□□□□□ -1.06
SMCHD1-213ENST00000609587 PRSS36Q5K4E3 855 aa8.46□□□□□ -1.06
SMCHD1-213ENST00000609587 PROSER2Q86WR7 435 aaPredicted RBP8.46□□□□□ -1.06
SMCHD1-213ENST00000609587 WWC1Q8IX03 1113 aa8.46□□□□□ -1.06
SMCHD1-213ENST00000609587 PRRT3Q5FWE3 981 aa8.45□□□□□ -1.06
SMCHD1-213ENST00000609587 AIDAQ96BJ3 306 aa8.45□□□□□ -1.06
SMCHD1-213ENST00000609587 NIFKQ9BYG3 293 aaKnown RBP8.45□□□□□ -1.06
SMCHD1-213ENST00000609587 ELOA3CA0A087WX78 387 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 ELOA3DA6NLF2 546 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 EFSO43281 561 aa8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 INHAP05111 366 aa8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 SOX11P35716 441 aa8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 GDF10P55107 478 aa8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 COL9A3Q14050 684 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 ELOA3BQ3SY89 546 aa8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 ARSJQ5FYB0 599 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 PHTF2Q8N3S3 785 aa8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 ELOA3Q8NG57 546 aa8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 PRR12Q9ULL5 1215 aa8.44□□□□□ -1.06
SMCHD1-213ENST00000609587 SPDYE3A6NKU9 549 aa8.43□□□□□ -1.06
SMCHD1-213ENST00000609587 APBA3O96018 575 aa8.43□□□□□ -1.06
SMCHD1-213ENST00000609587 USP3Q9Y6I4 520 aa8.43□□□□□ -1.06
SMCHD1-213ENST00000609587 USP4Q13107 963 aa8.42□□□□□ -1.06
SMCHD1-213ENST00000609587 NBPF1Q3BBV0 1214 aa8.42□□□□□ -1.06
SMCHD1-213ENST00000609587 OXLD1Q5BKU9 147 aa8.42□□□□□ -1.06
SMCHD1-213ENST00000609587 SAMD5Q5TGI4 173 aa8.42□□□□□ -1.06
SMCHD1-213ENST00000609587 ZIC5Q96T25 663 aa8.42□□□□□ -1.06
SMCHD1-213ENST00000609587 SMTNP53814 917 aa8.41□□□□□ -1.06
SMCHD1-213ENST00000609587 SYT9Q86SS6 491 aa8.41□□□□□ -1.06
SMCHD1-213ENST00000609587 NBPF11Q86T75 865 aa8.41□□□□□ -1.06
SMCHD1-213ENST00000609587 FNBP4Q8N3X1 1017 aaPredicted RBP8.41□□□□□ -1.06
SMCHD1-213ENST00000609587 ZDHHC3Q9NYG2 299 aa8.41□□□□□ -1.06
SMCHD1-213ENST00000609587 MARK1Q9P0L2 795 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms