RNA–Protein interactions for RNA: ENST00000601614.6

SSBP4-211, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 628 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-211ENST00000601614 GLTPD2A6NH11 291 aa22.11■■□□□ 1.13
SSBP4-211ENST00000601614 SOS1Q07889 1333 aaPredicted RBP22.1■■□□□ 1.13
SSBP4-211ENST00000601614 DNAJC10Q8IXB1 793 aa22.1■■□□□ 1.13
SSBP4-211ENST00000601614 VEGFAP15692 232 aaPredicted RBP22.09■■□□□ 1.13
SSBP4-211ENST00000601614 LMNB1P20700 586 aa22.09■■□□□ 1.13
SSBP4-211ENST00000601614 NFIXQ14938 502 aa22.09■■□□□ 1.13
SSBP4-211ENST00000601614 DICER1Q9UPY3 1922 aaKnown RBP22.08■■□□□ 1.13
SSBP4-211ENST00000601614 POTECB2RU33 542 aa22.08■■□□□ 1.13
SSBP4-211ENST00000601614 C1orf141Q5JVX7 400 aa22.08■■□□□ 1.13
SSBP4-211ENST00000601614 ANKRD31Q8N7Z5 1873 aa22.08■■□□□ 1.13
SSBP4-211ENST00000601614 CARMIL3Q8ND23 1372 aa22.08■■□□□ 1.12
SSBP4-211ENST00000601614 NFKBIEO00221 500 aa22.07■■□□□ 1.12
SSBP4-211ENST00000601614 ZPR1O75312 459 aa22.07■■□□□ 1.12
SSBP4-211ENST00000601614 BCL2L12Q9HB09 334 aa22.07■■□□□ 1.12
SSBP4-211ENST00000601614 POLR3GLQ9BT43 218 aa22.06■■□□□ 1.12
SSBP4-211ENST00000601614 FER1L6Q2WGJ9 1857 aa22.05■■□□□ 1.12
SSBP4-211ENST00000601614 CYP19A1P11511 503 aaPredicted RBP22.05■■□□□ 1.12
SSBP4-211ENST00000601614 COL15A1P39059 1388 aa22.04■■□□□ 1.12
SSBP4-211ENST00000601614 SULT6B1Q6IMI4 303 aa22.04■■□□□ 1.12
SSBP4-211ENST00000601614 NARFQ9UHQ1 456 aa22.04■■□□□ 1.12
SSBP4-211ENST00000601614 ZBTB1Q9Y2K1 713 aa22.04■■□□□ 1.12
SSBP4-211ENST00000601614 MRC1P22897 1456 aa22.03■■□□□ 1.12
SSBP4-211ENST00000601614 COL11A2P13942 1736 aaPredicted RBP22.03■■□□□ 1.12
SSBP4-211ENST00000601614 SERPINB2P05120 415 aa22.03■■□□□ 1.12
SSBP4-211ENST00000601614 SLC39A6Q13433 755 aa22.03■■□□□ 1.12
SSBP4-211ENST00000601614 TTLL6Q8N841 843 aa22.03■■□□□ 1.12
SSBP4-211ENST00000601614 LGR6Q9HBX8 967 aa22.02■■□□□ 1.12
SSBP4-211ENST00000601614 UBR2Q8IWV8 1755 aa22.02■■□□□ 1.11
SSBP4-211ENST00000601614 CACNA1SQ13698 1873 aa22.01■■□□□ 1.11
SSBP4-211ENST00000601614 C2CD5Q86YS7 1000 aa22.01■■□□□ 1.11
SSBP4-211ENST00000601614 SLC52A2Q9HAB3 445 aa22.01■■□□□ 1.11
SSBP4-211ENST00000601614 PANK3Q9H999 370 aa21.99■■□□□ 1.11
SSBP4-211ENST00000601614 IL13P35225 146 aa21.98■■□□□ 1.11
SSBP4-211ENST00000601614 AKAP4Q5JQC9 854 aa21.98■■□□□ 1.11
SSBP4-211ENST00000601614 POTEIP0CG38 1075 aa21.97■■□□□ 1.11
SSBP4-211ENST00000601614 POTEJP0CG39 1038 aa21.97■■□□□ 1.11
SSBP4-211ENST00000601614 SCN7AQ01118 1682 aa21.96■■□□□ 1.11
SSBP4-211ENST00000601614 H0YIN7 160 aa21.96■■□□□ 1.11
SSBP4-211ENST00000601614 RNMTO43148 476 aaKnown RBP21.96■■□□□ 1.11
SSBP4-211ENST00000601614 BICDL1Q6ZP65 573 aa21.96■■□□□ 1.11
SSBP4-211ENST00000601614 MKRN1Q9UHC7 482 aaKnown RBP21.96■■□□□ 1.11
SSBP4-211ENST00000601614 SLX4Q8IY92 1834 aa21.95■■□□□ 1.1
SSBP4-211ENST00000601614 ZNF219Q9P2Y4 722 aaPredicted RBP21.94■■□□□ 1.1
SSBP4-211ENST00000601614 C21orf2O43822 256 aa21.93■■□□□ 1.1
SSBP4-211ENST00000601614 CANXP27824 592 aaKnown RBP21.93■■□□□ 1.1
SSBP4-211ENST00000601614 ERFEQ4G0M1 354 aa21.93■■□□□ 1.1
SSBP4-211ENST00000601614 DPY19L2Q6NUT2 758 aa21.93■■□□□ 1.1
SSBP4-211ENST00000601614 MORC1Q86VD1 984 aa21.93■■□□□ 1.1
SSBP4-211ENST00000601614 CCDC24Q8N4L8 307 aa21.93■■□□□ 1.1
SSBP4-211ENST00000601614 CREBZFQ9NS37 354 aa21.93■■□□□ 1.1
SSBP4-211ENST00000601614 ARFGEF2Q9Y6D5 1785 aa21.92■■□□□ 1.1
SSBP4-211ENST00000601614 TBC1D9BQ66K14 1250 aa21.92■■□□□ 1.1
SSBP4-211ENST00000601614 ZNF622Q969S3 477 aaKnown RBP eCLIP21.92■■□□□ 1.1
SSBP4-211ENST00000601614 FOXN1O15353 648 aa21.91■■□□□ 1.1
SSBP4-211ENST00000601614 CHADLQ6NUI6 762 aa21.91■■□□□ 1.1
SSBP4-211ENST00000601614 DDNO94850 711 aaPredicted RBP21.9■■□□□ 1.1
SSBP4-211ENST00000601614 EIF5P55010 431 aaKnown RBP21.9■■□□□ 1.1
SSBP4-211ENST00000601614 HMOX1P09601 288 aa21.89■■□□□ 1.09
SSBP4-211ENST00000601614 PRR5LQ6MZQ0 368 aa21.89■■□□□ 1.09
SSBP4-211ENST00000601614 VSIG10Q8N0Z9 540 aa21.89■■□□□ 1.09
SSBP4-211ENST00000601614 MTHFSDQ2M296 383 aaKnown RBP21.88■■□□□ 1.09
SSBP4-211ENST00000601614 SIPA1L3O60292 1781 aaPredicted RBP21.88■■□□□ 1.09
SSBP4-211ENST00000601614 CNTNAP1P78357 1384 aa21.87■■□□□ 1.09
SSBP4-211ENST00000601614 SCN4AP35499 1836 aa21.87■■□□□ 1.09
SSBP4-211ENST00000601614 LTBP3Q9NS15 1303 aa21.87■■□□□ 1.09
SSBP4-211ENST00000601614 BRIP1Q9BX63 1249 aa21.87■■□□□ 1.09
SSBP4-211ENST00000601614 PASKQ96RG2 1323 aa21.86■■□□□ 1.09
SSBP4-211ENST00000601614 TAOK3Q9H2K8 898 aa21.86■■□□□ 1.09
SSBP4-211ENST00000601614 BCORQ6W2J9 1755 aa21.86■■□□□ 1.09
SSBP4-211ENST00000601614 PDE6BP35913 854 aa21.85■■□□□ 1.09
SSBP4-211ENST00000601614 TBC1D2BQ9UPU7 963 aa21.85■■□□□ 1.09
SSBP4-211ENST00000601614 HSPA5P11021 654 aaKnown RBP21.84■■□□□ 1.09
SSBP4-211ENST00000601614 ZNF496Q96IT1 587 aaPredicted RBP21.83■■□□□ 1.09
SSBP4-211ENST00000601614 PRDM10Q9NQV6 1147 aa21.83■■□□□ 1.09
SSBP4-211ENST00000601614 PDZRN3Q9UPQ7 1066 aa21.83■■□□□ 1.09
SSBP4-211ENST00000601614 ADAMTSL1Q8N6G6 1762 aa21.83■■□□□ 1.09
SSBP4-211ENST00000601614 A0A087WZG4 1122 aa21.82■■□□□ 1.08
SSBP4-211ENST00000601614 STARD3NLO95772 234 aa21.82■■□□□ 1.08
SSBP4-211ENST00000601614 PRPF40BQ6NWY9 871 aaKnown RBP21.82■■□□□ 1.08
SSBP4-211ENST00000601614 VEGFBP49765 207 aa21.81■■□□□ 1.08
SSBP4-211ENST00000601614 TIMELESSQ9UNS1 1208 aa21.81■■□□□ 1.08
SSBP4-211ENST00000601614 ZNF330Q9Y3S2 320 aaPredicted RBP21.81■■□□□ 1.08
SSBP4-211ENST00000601614 HEG1Q9ULI3 1381 aa21.81■■□□□ 1.08
SSBP4-211ENST00000601614 SRGNP10124 158 aa21.8■■□□□ 1.08
SSBP4-211ENST00000601614 LDHDQ86WU2 507 aa21.8■■□□□ 1.08
SSBP4-211ENST00000601614 TAF1DQ9H5J8 278 aaPredicted RBP21.8■■□□□ 1.08
SSBP4-211ENST00000601614 CAMTA2O94983 1202 aa21.79■■□□□ 1.08
SSBP4-211ENST00000601614 ITGBL1O95965 494 aaPredicted RBP21.79■■□□□ 1.08
SSBP4-211ENST00000601614 AMER1Q5JTC6 1135 aaPredicted RBP21.79■■□□□ 1.08
SSBP4-211ENST00000601614 STYK1Q6J9G0 422 aa21.79■■□□□ 1.08
SSBP4-211ENST00000601614 TTC5Q8N0Z6 440 aa21.79■■□□□ 1.08
SSBP4-211ENST00000601614 CNKSR1Q969H4 720 aa21.79■■□□□ 1.08
SSBP4-211ENST00000601614 L3MBTL3Q96JM7 780 aaPredicted RBP21.79■■□□□ 1.08
SSBP4-211ENST00000601614 KNSTRNQ9Y448 316 aa21.79■■□□□ 1.08
SSBP4-211ENST00000601614 EIF4G2P78344 907 aaKnown RBP eCLIP21.78■■□□□ 1.086e-7■■□□□ 11.9
SSBP4-211ENST00000601614 CNBD1Q8NA66 436 aa21.78■■□□□ 1.08
SSBP4-211ENST00000601614 A1BGP04217 495 aa21.77■■□□□ 1.08
SSBP4-211ENST00000601614 IL6STP40189 918 aaPredicted RBP21.77■■□□□ 1.08
SSBP4-211ENST00000601614 CTCFP49711 727 aaPredicted RBP21.77■■□□□ 1.08
SSBP4-211ENST00000601614 ZNF790Q6PG37 636 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms