RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 COL3A1P02461 1466 aaPredicted RBP23.6■■□□□ 1.37
SHKBP1-223ENST00000600552 MRC1P22897 1456 aa23.6■■□□□ 1.37
SHKBP1-223ENST00000600552 KCPQ6ZWJ8 1503 aa23.59■■□□□ 1.37
SHKBP1-223ENST00000600552 TM4SF1P30408 202 aa23.59■■□□□ 1.37
SHKBP1-223ENST00000600552 DALRD3Q5D0E6 543 aaKnown RBP23.59■■□□□ 1.37
SHKBP1-223ENST00000600552 BICDL1Q6ZP65 573 aa23.59■■□□□ 1.37
SHKBP1-223ENST00000600552 NARFQ9UHQ1 456 aa23.59■■□□□ 1.37
SHKBP1-223ENST00000600552 COL15A1P39059 1388 aa23.59■■□□□ 1.37
SHKBP1-223ENST00000600552 STARD3NLO95772 234 aa23.58■■□□□ 1.37
SHKBP1-223ENST00000600552 PRKAR2BP31323 418 aa23.58■■□□□ 1.37
SHKBP1-223ENST00000600552 NFIXQ14938 502 aa23.57■■□□□ 1.36
SHKBP1-223ENST00000600552 VSIG10Q8N0Z9 540 aa23.57■■□□□ 1.36
SHKBP1-223ENST00000600552 ZNF496Q96IT1 587 aaPredicted RBP23.57■■□□□ 1.36
SHKBP1-223ENST00000600552 PHACTR3Q96KR7 559 aa23.57■■□□□ 1.36
SHKBP1-223ENST00000600552 NUDCQ9Y266 331 aa23.56■■□□□ 1.36
SHKBP1-223ENST00000600552 U2AF1L5P0DN76 240 aaPredicted RBP23.55■■□□□ 1.36
SHKBP1-223ENST00000600552 U2AF1Q01081 240 aaKnown RBP eCLIP23.55■■□□□ 1.36
SHKBP1-223ENST00000600552 C9orf131Q5VYM1 1079 aa23.55■■□□□ 1.36
SHKBP1-223ENST00000600552 SERPINB2P05120 415 aa23.54■■□□□ 1.36
SHKBP1-223ENST00000600552 ZNF790Q6PG37 636 aa23.54■■□□□ 1.36
SHKBP1-223ENST00000600552 ADAMTS7Q9UKP4 1686 aa23.54■■□□□ 1.36
SHKBP1-223ENST00000600552 PPP2R1AP30153 589 aa23.53■■□□□ 1.36
SHKBP1-223ENST00000600552 BCL2L12Q9HB09 334 aa23.53■■□□□ 1.36
SHKBP1-223ENST00000600552 BRCA1P38398 1863 aaKnown RBP23.53■■□□□ 1.36
SHKBP1-223ENST00000600552 KIF3CO14782 793 aa23.52■■□□□ 1.36
SHKBP1-223ENST00000600552 KCNQ3O43525 872 aa23.52■■□□□ 1.36
SHKBP1-223ENST00000600552 RSPH6AQ9H0K4 717 aa23.52■■□□□ 1.36
SHKBP1-223ENST00000600552 TBC1D2BQ9UPU7 963 aa23.52■■□□□ 1.36
SHKBP1-223ENST00000600552 A0A087WZG4 1122 aa23.51■■□□□ 1.35
SHKBP1-223ENST00000600552 BTBD11A6QL63 1104 aa23.51■■□□□ 1.35
SHKBP1-223ENST00000600552 NPM2Q86SE8 214 aaKnown RBP23.51■■□□□ 1.35
SHKBP1-223ENST00000600552 HEG1Q9ULI3 1381 aa23.51■■□□□ 1.35
SHKBP1-223ENST00000600552 FMNL2Q96PY5 1086 aa23.5■■□□□ 1.35
SHKBP1-223ENST00000600552 TEX13AQ9BXU3 409 aaPredicted RBP23.5■■□□□ 1.35
SHKBP1-223ENST00000600552 RNF181Q9P0P0 153 aa23.5■■□□□ 1.35
SHKBP1-223ENST00000600552 UBR2Q8IWV8 1755 aa23.5■■□□□ 1.35
SHKBP1-223ENST00000600552 AFDNP55196 1824 aaKnown RBP23.49■■□□□ 1.35
SHKBP1-223ENST00000600552 A1BGP04217 495 aa23.49■■□□□ 1.35
SHKBP1-223ENST00000600552 EIF5P55010 431 aaKnown RBP23.49■■□□□ 1.35
SHKBP1-223ENST00000600552 MCM10Q7L590 875 aa23.49■■□□□ 1.35
SHKBP1-223ENST00000600552 C2CD5Q86YS7 1000 aa23.49■■□□□ 1.35
SHKBP1-223ENST00000600552 CCDC24Q8N4L8 307 aa23.49■■□□□ 1.35
SHKBP1-223ENST00000600552 RTF1Q92541 710 aaKnown RBP23.49■■□□□ 1.35
SHKBP1-223ENST00000600552 NMRK2Q9NPI5 230 aa23.49■■□□□ 1.35
SHKBP1-223ENST00000600552 ARFGEF1Q9Y6D6 1849 aa23.48■■□□□ 1.35
SHKBP1-223ENST00000600552 HSPA6P17066 643 aa23.48■■□□□ 1.35
SHKBP1-223ENST00000600552 PIP4K2AP48426 406 aaPredicted RBP23.47■■□□□ 1.35
SHKBP1-223ENST00000600552 TBC1D9BQ66K14 1250 aa23.47■■□□□ 1.35
SHKBP1-223ENST00000600552 DCTN1Q14203 1278 aa23.46■■□□□ 1.35
SHKBP1-223ENST00000600552 H0YIN7 160 aa23.45■■□□□ 1.34
SHKBP1-223ENST00000600552 NPHP1O15259 732 aa23.45■■□□□ 1.34
SHKBP1-223ENST00000600552 RASSF7Q02833 373 aa23.45■■□□□ 1.34
SHKBP1-223ENST00000600552 ZNF219Q9P2Y4 722 aaPredicted RBP23.45■■□□□ 1.34
SHKBP1-223ENST00000600552 C16orf71Q8IYS4 520 aaPredicted RBP23.44■■□□□ 1.34
SHKBP1-223ENST00000600552 ZNF622Q969S3 477 aaKnown RBP eCLIP23.44■■□□□ 1.342e-8■□□□□ 10.5
SHKBP1-223ENST00000600552 SIPA1L3O60292 1781 aaPredicted RBP23.44■■□□□ 1.34
SHKBP1-223ENST00000600552 CARMIL3Q8ND23 1372 aa23.43■■□□□ 1.34
SHKBP1-223ENST00000600552 PRAMEF22A3QJZ6 481 aa23.43■■□□□ 1.34
SHKBP1-223ENST00000600552 IL6STP40189 918 aaPredicted RBP23.43■■□□□ 1.34
SHKBP1-223ENST00000600552 TTLL6Q8N841 843 aa23.43■■□□□ 1.34
SHKBP1-223ENST00000600552 CEMIPQ8WUJ3 1361 aa23.42■■□□□ 1.34
SHKBP1-223ENST00000600552 USP16Q9Y5T5 823 aa23.42■■□□□ 1.34
SHKBP1-223ENST00000600552 TOMM70O94826 608 aa23.41■■□□□ 1.34
SHKBP1-223ENST00000600552 DZIP3Q86Y13 1208 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-223ENST00000600552 SETDB2Q96T68 719 aa23.4■■□□□ 1.34
SHKBP1-223ENST00000600552 RRAGCQ9HB90 399 aa23.4■■□□□ 1.34
SHKBP1-223ENST00000600552 MIS18AQ9NYP9 233 aa23.4■■□□□ 1.34
SHKBP1-223ENST00000600552 KDM2BQ8NHM5 1336 aa23.38■■□□□ 1.33
SHKBP1-223ENST00000600552 CAMTA2O94983 1202 aa23.38■■□□□ 1.33
SHKBP1-223ENST00000600552 NEFMP07197 916 aa23.38■■□□□ 1.33
SHKBP1-223ENST00000600552 PRR5LQ6MZQ0 368 aa23.38■■□□□ 1.33
SHKBP1-223ENST00000600552 NRXN2Q9P2S2 1712 aa23.38■■□□□ 1.33
SHKBP1-223ENST00000600552 SBF1O95248 1867 aa23.38■■□□□ 1.33
SHKBP1-223ENST00000600552 SNRPA1P09661 255 aaKnown RBP23.37■■□□□ 1.33
SHKBP1-223ENST00000600552 PDE6BP35913 854 aa23.37■■□□□ 1.33
SHKBP1-223ENST00000600552 CEP350Q5VT06 3117 aa23.37■■□□□ 1.33
SHKBP1-223ENST00000600552 CNBD1Q8NA66 436 aa23.36■■□□□ 1.33
SHKBP1-223ENST00000600552 LMNB1P20700 586 aa23.35■■□□□ 1.33
SHKBP1-223ENST00000600552 BRIP1Q9BX63 1249 aa23.35■■□□□ 1.33
SHKBP1-223ENST00000600552 FAM177BA6PVY3 158 aa23.34■■□□□ 1.33
SHKBP1-223ENST00000600552 C21orf2O43822 256 aa23.34■■□□□ 1.33
SHKBP1-223ENST00000600552 ST5P78524 1137 aa23.34■■□□□ 1.33
SHKBP1-223ENST00000600552 TAF7Q15545 349 aaPredicted RBP23.34■■□□□ 1.33
SHKBP1-223ENST00000600552 SCN7AQ01118 1682 aa23.33■■□□□ 1.33
SHKBP1-223ENST00000600552 APLP1P51693 650 aa23.33■■□□□ 1.33
SHKBP1-223ENST00000600552 PRELPP51888 382 aa23.33■■□□□ 1.33
SHKBP1-223ENST00000600552 NGEFQ8N5V2 710 aa23.33■■□□□ 1.33
SHKBP1-223ENST00000600552 CCDC88AQ3V6T2 1871 aa23.32■■□□□ 1.32
SHKBP1-223ENST00000600552 ANKRD31Q8N7Z5 1873 aa23.32■■□□□ 1.32
SHKBP1-223ENST00000600552 DLEC1Q9Y238 1755 aa23.32■■□□□ 1.32
SHKBP1-223ENST00000600552 HTATSF1O43719 755 aaKnown RBP23.32■■□□□ 1.32
SHKBP1-223ENST00000600552 NBPF5PQ86XG9 351 aaPredicted RBP23.32■■□□□ 1.32
SHKBP1-223ENST00000600552 RBM46Q8TBY0 533 aaKnown RBP23.31■■□□□ 1.32
SHKBP1-223ENST00000600552 NBPF26B4DH59 902 aa23.3■■□□□ 1.32
SHKBP1-223ENST00000600552 NFKBIEO00221 500 aa23.3■■□□□ 1.32
SHKBP1-223ENST00000600552 NBPF10Q6P3W6 841 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-223ENST00000600552 NBPF15Q8N660 670 aa23.3■■□□□ 1.32
SHKBP1-223ENST00000600552 THUMPD2Q9BTF0 503 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-223ENST00000600552 ZNF652Q9Y2D9 606 aa23.3■■□□□ 1.32
SHKBP1-223ENST00000600552 HTRA3P83110 453 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms