RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 WDR43Q15061 677 aaKnown RBP eCLIP21.41■■□□□ 1.02
LSM4-206ENST00000600289 MSH5O43196 834 aa21.4■■□□□ 1.02
LSM4-206ENST00000600289 HTRA3P83110 453 aa21.4■■□□□ 1.02
LSM4-206ENST00000600289 SLC39A6Q13433 755 aa21.4■■□□□ 1.02
LSM4-206ENST00000600289 ZNF790Q6PG37 636 aa21.39■■□□□ 1.01
LSM4-206ENST00000600289 MCM10Q7L590 875 aa21.39■■□□□ 1.01
LSM4-206ENST00000600289 AMIGO3Q86WK7 504 aa21.39■■□□□ 1.01
LSM4-206ENST00000600289 TTC5Q8N0Z6 440 aa21.39■■□□□ 1.01
LSM4-206ENST00000600289 WWC3Q9ULE0 1092 aa21.39■■□□□ 1.01
LSM4-206ENST00000600289 GNPATO15228 680 aa21.38■■□□□ 1.01
LSM4-206ENST00000600289 HEG1Q9ULI3 1381 aa21.37■■□□□ 1.01
LSM4-206ENST00000600289 KIF13BQ9NQT8 1826 aa21.37■■□□□ 1.01
LSM4-206ENST00000600289 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.37■■□□□ 1.01
LSM4-206ENST00000600289 ANP32CO43423 234 aa21.37■■□□□ 1.01
LSM4-206ENST00000600289 ADRA2BP18089 450 aa21.37■■□□□ 1.01
LSM4-206ENST00000600289 BTBD11A6QL63 1104 aa21.36■■□□□ 1.01
LSM4-206ENST00000600289 RUNDC1Q96C34 613 aa21.36■■□□□ 1.01
LSM4-206ENST00000600289 ADAMTS8Q9UP79 889 aa21.36■■□□□ 1.01
LSM4-206ENST00000600289 RPS6KA4O75676 772 aa21.35■■□□□ 1.01
LSM4-206ENST00000600289 CRKLP46109 303 aaKnown RBP21.35■■□□□ 1.01
LSM4-206ENST00000600289 DCTN1Q14203 1278 aa21.35■■□□□ 1.01
LSM4-206ENST00000600289 DNAJC10Q8IXB1 793 aa21.35■■□□□ 1.01
LSM4-206ENST00000600289 RTCBQ9Y3I0 505 aaKnown RBP21.35■■□□□ 1.01
LSM4-206ENST00000600289 N4BP2Q86UW6 1770 aaPredicted RBP21.34■■□□□ 1.01
LSM4-206ENST00000600289 CYP19A1P11511 503 aaPredicted RBP21.34■■□□□ 1.01
LSM4-206ENST00000600289 TMPOP42166 694 aaKnown RBP21.34■■□□□ 1.01
LSM4-206ENST00000600289 ZNF496Q96IT1 587 aaPredicted RBP21.34■■□□□ 1.01
LSM4-206ENST00000600289 FMNL2Q96PY5 1086 aa21.34■■□□□ 1.01
LSM4-206ENST00000600289 LMOD3Q0VAK6 560 aa21.33■■□□□ 1.01
LSM4-206ENST00000600289 TAF7Q15545 349 aaPredicted RBP21.33■■□□□ 1.01
LSM4-206ENST00000600289 INTS5Q6P9B9 1019 aaKnown RBP21.33■■□□□ 1.01
LSM4-206ENST00000600289 NMRK2Q9NPI5 230 aa21.33■■□□□ 1.01
LSM4-206ENST00000600289 BRCA1P38398 1863 aaKnown RBP21.32■■□□□ 1
LSM4-206ENST00000600289 PHF14O94880 888 aa21.32■■□□□ 1
LSM4-206ENST00000600289 PNISRQ8TF01 805 aaKnown RBP21.32■■□□□ 1
LSM4-206ENST00000600289 TEX13AQ9BXU3 409 aaPredicted RBP21.32■■□□□ 1
LSM4-206ENST00000600289 RIPK4P57078 832 aa21.31■■□□□ 1
LSM4-206ENST00000600289 TRAPPC3LQ5T215 181 aa21.31■■□□□ 1
LSM4-206ENST00000600289 CCDC146Q8IYE0 955 aa21.31■■□□□ 1
LSM4-206ENST00000600289 CCDC87Q9NVE4 849 aa21.31■■□□□ 1
LSM4-206ENST00000600289 SCN7AQ01118 1682 aa21.31■■□□□ 1
LSM4-206ENST00000600289 CCDC184Q52MB2 194 aa21.3■■□□□ 1
LSM4-206ENST00000600289 RBM46Q8TBY0 533 aaKnown RBP21.3■■□□□ 1
LSM4-206ENST00000600289 SOS1Q07889 1333 aaPredicted RBP21.29■■□□□ 1
LSM4-206ENST00000600289 BCORQ6W2J9 1755 aa21.29■■□□□ 1
LSM4-206ENST00000600289 KCNQ3O43525 872 aa21.29■■□□□ 1
LSM4-206ENST00000600289 SMIM5Q71RC9 77 aa21.29■■□□□ 1
LSM4-206ENST00000600289 STARD3NLO95772 234 aa21.28■■□□□ 1
LSM4-206ENST00000600289 ARHGEF1Q92888 912 aaKnown RBP21.28■■□□□ 1
LSM4-206ENST00000600289 BABAM1Q9NWV8 329 aa21.28■■□□□ 1
LSM4-206ENST00000600289 COL15A1P39059 1388 aa21.26■□□□□ 0.99
LSM4-206ENST00000600289 TNRC6CQ9HCJ0 1690 aaKnown RBP21.26■□□□□ 0.99
LSM4-206ENST00000600289 THUMPD2Q9BTF0 503 aaKnown RBP21.26■□□□□ 0.99
LSM4-206ENST00000600289 ZBTB1Q9Y2K1 713 aa21.26■□□□□ 0.99
LSM4-206ENST00000600289 PXDNLA1KZ92 1463 aa21.26■□□□□ 0.99
LSM4-206ENST00000600289 SNRPA1P09661 255 aaKnown RBP21.25■□□□□ 0.99
LSM4-206ENST00000600289 RFC4P35249 363 aa21.25■□□□□ 0.99
LSM4-206ENST00000600289 MRS2Q9HD23 443 aa21.25■□□□□ 0.99
LSM4-206ENST00000600289 TRIM35Q9UPQ4 493 aa21.25■□□□□ 0.99
LSM4-206ENST00000600289 USP42Q9H9J4 1324 aaKnown RBP21.25■□□□□ 0.99
LSM4-206ENST00000600289 ARFGEF1Q9Y6D6 1849 aa21.25■□□□□ 0.99
LSM4-206ENST00000600289 GYS1P13807 737 aa21.23■□□□□ 0.99
LSM4-206ENST00000600289 NLGN1Q8N2Q7 840 aa21.23■□□□□ 0.99
LSM4-206ENST00000600289 RRP7AQ9Y3A4 280 aaKnown RBP21.23■□□□□ 0.99
LSM4-206ENST00000600289 NRXN2Q9P2S2 1712 aa21.23■□□□□ 0.99
LSM4-206ENST00000600289 EIF5P55010 431 aaKnown RBP21.22■□□□□ 0.99
LSM4-206ENST00000600289 FSTL1Q12841 308 aa21.22■□□□□ 0.99
LSM4-206ENST00000600289 AFDNP55196 1824 aaKnown RBP21.21■□□□□ 0.99
LSM4-206ENST00000600289 IL6STP40189 918 aaPredicted RBP21.21■□□□□ 0.99
LSM4-206ENST00000600289 EIF4A1P60842 406 aaKnown RBP21.21■□□□□ 0.99
LSM4-206ENST00000600289 MIS18AQ9NYP9 233 aa21.21■□□□□ 0.99
LSM4-206ENST00000600289 APAF1O14727 1248 aa21.2■□□□□ 0.98
LSM4-206ENST00000600289 HSPA1AP0DMV8 641 aaKnown RBP21.2■□□□□ 0.98
LSM4-206ENST00000600289 HSPA1BP0DMV9 641 aaKnown RBP21.2■□□□□ 0.98
LSM4-206ENST00000600289 NEUROD2Q15784 382 aa21.2■□□□□ 0.98
LSM4-206ENST00000600289 NCBP3Q53F19 620 aaKnown RBP21.2■□□□□ 0.98
LSM4-206ENST00000600289 NARFQ9UHQ1 456 aa21.2■□□□□ 0.98
LSM4-206ENST00000600289 USP16Q9Y5T5 823 aa21.2■□□□□ 0.98
LSM4-206ENST00000600289 C10orf71Q711Q0 1435 aa21.2■□□□□ 0.98
LSM4-206ENST00000600289 A0A087WZG4 1122 aa21.19■□□□□ 0.98
LSM4-206ENST00000600289 TSPYL4Q9UJ04 414 aa21.19■□□□□ 0.98
LSM4-206ENST00000600289 SBF1O95248 1867 aa21.19■□□□□ 0.98
LSM4-206ENST00000600289 PRAMEF22A3QJZ6 481 aa21.18■□□□□ 0.98
LSM4-206ENST00000600289 CANXP27824 592 aaKnown RBP21.18■□□□□ 0.98
LSM4-206ENST00000600289 CHL1O00533 1208 aa21.17■□□□□ 0.98
LSM4-206ENST00000600289 SRP68Q9UHB9 627 aaKnown RBP21.17■□□□□ 0.98
LSM4-206ENST00000600289 ZPR1O75312 459 aa21.16■□□□□ 0.98
LSM4-206ENST00000600289 A1BGP04217 495 aa21.16■□□□□ 0.98
LSM4-206ENST00000600289 MMP10P09238 476 aa21.16■□□□□ 0.98
LSM4-206ENST00000600289 C16orf71Q8IYS4 520 aaPredicted RBP21.16■□□□□ 0.98
LSM4-206ENST00000600289 CALD1Q05682 793 aaKnown RBP21.15■□□□□ 0.98
LSM4-206ENST00000600289 CCDC27Q2M243 656 aa21.15■□□□□ 0.98
LSM4-206ENST00000600289 ERBB4Q15303 1308 aa21.14■□□□□ 0.97
LSM4-206ENST00000600289 FKBP8Q14318 412 aa21.14■□□□□ 0.97
LSM4-206ENST00000600289 USPL1Q5W0Q7 1092 aa21.14■□□□□ 0.97
LSM4-206ENST00000600289 CFAP44Q96MT7 982 aa21.14■□□□□ 0.97
LSM4-206ENST00000600289 NUP98P52948 1817 aa21.13■□□□□ 0.97
LSM4-206ENST00000600289 ZNF853P0CG23 659 aa21.13■□□□□ 0.97
LSM4-206ENST00000600289 TM4SF1P30408 202 aa21.13■□□□□ 0.97
LSM4-206ENST00000600289 BCL2L12Q9HB09 334 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms